View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9578_low_23 (Length: 343)

Name: NF9578_low_23
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9578_low_23
NF9578_low_23
[»] chr8 (11 HSPs)
chr8 (15-331)||(2916346-2916663)
chr8 (52-197)||(3142516-3142664)
chr8 (52-187)||(2711646-2711781)
chr8 (73-187)||(2911491-2911605)
chr8 (49-187)||(9851460-9851601)
chr8 (60-187)||(2988966-2989093)
chr8 (69-188)||(13790921-13791040)
chr8 (52-98)||(3001974-3002020)
chr8 (114-188)||(3282857-3282931)
chr8 (60-117)||(2980054-2980111)
chr8 (263-322)||(3002153-3002212)
[»] chr7 (1 HSPs)
chr7 (56-322)||(3919376-3919646)
[»] scaffold0065 (4 HSPs)
scaffold0065 (52-199)||(45071-45221)
scaffold0065 (52-187)||(50240-50378)
scaffold0065 (262-319)||(45285-45342)
scaffold0065 (262-322)||(50454-50513)
[»] chr6 (1 HSPs)
chr6 (47-187)||(18355350-18355490)
[»] chr1 (2 HSPs)
chr1 (47-187)||(10756020-10756160)
chr1 (266-322)||(10755884-10755940)
[»] chr4 (1 HSPs)
chr4 (47-177)||(8572660-8572790)
[»] chr3 (1 HSPs)
chr3 (47-177)||(28698620-28698750)


Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 15 - 331
Target Start/End: Complemental strand, 2916663 - 2916346
Alignment:
Q  15 tggtgttaagtatgaggtcgataggcttcgggagacggttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916663 tggtgttaagtatgaggtcgataggcttcgggagacggttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgta 2916564  T
Q  115 caaaactggattagaagactcaatgatgtgcttcatcctgctgatgacttgctagatgaatttgttattgaaggcatgcgacacagaatgaaagcacgta 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916563 caaaactggattagaagactcaatgatgtgcttcatcctgctgatgacttgctagatgaatttgttattgaaggcatgcgacacagaatgaaagcacgta 2916464  T
Q  215 agaagaacaaagtgtcaaaggtattgcattccttatctcc-nnnnnnnttgctttttgccgtaaaatggctcgagagattgaaaaaataagaaaaatatt 313  Q
    ||||||||||||||||||||||||||||||||||||||||        |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2916463 agaagaacaaagtgtcaaaggtattgcattccttatctccaaaaaaaattgcttttcgccgtaaaatggctcgagagattgaaaaaataagaaaaatatt 2916364  T
Q  314 taatgatgtagttgatga 331  Q
    |||||||||||| |||||    
T  2916363 taatgatgtagtggatga 2916346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 52 - 197
Target Start/End: Complemental strand, 3142664 - 3142516
Alignment:
Q  52 gttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactca---atgatgtgcttc 148  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||  |||  ||||||||||||| |||||| ||||||||||   ||||||| ||||    
T  3142664 gttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagagaaaagtcatgctgtacaaatctggataagaagactcaaagatgatgtacttc 3142565  T
Q  149 atcctgctgatgacttgctagatgaatttgttattgaaggcatgcgaca 197  Q
    |||||||||||||||||||||||||||||| ||| |||| |||| ||||    
T  3142564 atcctgctgatgacttgctagatgaatttgctatcgaagacatgagaca 3142516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 52 - 187
Target Start/End: Complemental strand, 2711781 - 2711646
Alignment:
Q  52 gttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactcaatgatgtgcttcatc 151  Q
    |||||||||||||||||||| |||||||||||||| || |||||||| ||||  |||||||||||||||||| ||||||| ||||| |||||||||| ||    
T  2711781 gttgaatccatcaaagctgtcctccttgatgctgaagacaaacaagagcaaagtcatgctgtacaaaactgggttagaaggctcaaagatgtgcttcttc 2711682  T
Q  152 ctgctgatgacttgctagatgaatttgttattgaag 187  Q
    |||||||||| ||| ||||||| ||| |||||||||    
T  2711681 ctgctgatgatttgatagatgagtttcttattgaag 2711646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 2911605 - 2911491
Alignment:
Q  73 ctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactcaatgatgtgcttcatcctgctgatgacttgctagatg 172  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||  ||||||  ||||||||||||    
T  2911605 ctccttgatgctgaggacaaacaagaacaaaaccatgctgtaaaaaactggattagaagactcaaagatgtgctgaattttgctgacaacttgctagatg 2911506  T
Q  173 aatttgttattgaag 187  Q
    |||||||||||||||    
T  2911505 aatttgttattgaag 2911491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 9851601 - 9851460
Alignment:
Q  49 acggttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaa---caaaaccatgctgtacaaaactggattagaagactcaatgatgtgc 145  Q
    ||||||||||| || | || |||||||||||||||||| ||||||||||||   ||||| |||||||| | ||| ||| | ||||| ||||| |||||||    
T  9851601 acggttgaatctattagagttgtgctccttgatgctgaagagaaacaagaagcacaaaatcatgctgttcgaaattgggtaagaaggctcaaagatgtgc 9851502  T
Q  146 ttcatcctgctgatgacttgctagatgaatttgttattgaag 187  Q
    |||||||||| ||||| |||||||||||||||||||||||||    
T  9851501 ttcatcctgcagatgatttgctagatgaatttgttattgaag 9851460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 187
Target Start/End: Original strand, 2988966 - 2989093
Alignment:
Q  60 catcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactcaatgatgtgcttcatcctgctgat 159  Q
    ||||| |||||| ||||||||||||||||||||||||||  |||  | ||||||||||  |||| | ||||| ||||| || ||||||| |||||| |||    
T  2988966 catcagagctgtactccttgatgctgaggagaaacaagagaaaagtcctgctgtacaagtctgggtaagaaggctcaaagacgtgcttcttcctgcagat 2989065  T
Q  160 gacttgctagatgaatttgttattgaag 187  Q
    || ||| ||||||| ||| |||||||||    
T  2989066 gatttgatagatgagtttcttattgaag 2989093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 188
Target Start/End: Original strand, 13790921 - 13791040
Alignment:
Q  69 tgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactcaatgatgtgcttcatcctgctgatgacttgcta 168  Q
    |||||||||||| ||  |||| ||||| ||||||||   || |||||| || ||||| ||||| ||||  ||||||||||||| ||| ||||||||||||    
T  13790921 tgtgctccttgacgcccaggataaacaggaacaaaattttgttgtacagaattggataagaaggctcacagatgtgcttcatcttgcagatgacttgcta 13791020  T
Q  169 gatgaatttgttattgaagg 188  Q
    ||||||||| ||||||||||    
T  13791021 gatgaatttattattgaagg 13791040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 3001974 - 3002020
Alignment:
Q  52 gttgaatccatcaaagctgtgctccttgatgctgaggagaaacaaga 98  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||    
T  3001974 gttgaatccatcaaagctgtgctccttgatgctgaagacaaacaaga 3002020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 3282931 - 3282857
Alignment:
Q  114 acaaaactggattagaagactcaatgatgtgcttcatcctgctgatgacttgctagatgaatttgttattgaagg 188  Q
    |||||| |||||  |||| ||||| ||||||||||||| ||| ||||||||||||||||||||  ||||||||||    
T  3282931 acaaaattggataggaaggctcaaagatgtgcttcatcttgcagatgacttgctagatgaattcattattgaagg 3282857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 2980054 - 2980111
Alignment:
Q  60 catcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaa 117  Q
    ||||| |||||| ||||||||||||||||||||||||||  |||  ||||||||||||    
T  2980054 catcagagctgtactccttgatgctgaggagaaacaagagaaaagtcatgctgtacaa 2980111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 322
Target Start/End: Original strand, 3002153 - 3002212
Alignment:
Q  263 tgctttttgccgtaaaatggctcgagagattgaaaaaataagaaaaatatttaatgatgt 322  Q
    ||||||||||| |||||||||||  |||||||||||||||  |||||  |||||||||||    
T  3002153 tgctttttgccataaaatggctcttgagattgaaaaaatacaaaaaagttttaatgatgt 3002212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 56 - 322
Target Start/End: Complemental strand, 3919646 - 3919376
Alignment:
Q  56 aatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactca---atgatgtgcttcatcc 152  Q
    ||||||||| |||||||||||||||||| |||||||||||| ||||||| |||| ||| ||||||||||| ||||| ||||   ||||||||||||||||    
T  3919646 aatccatcagagctgtgctccttgatgccgaggagaaacaacaacaaaatcatggtgtgcaaaactggataagaaggctcaaagatgatgtgcttcatcc 3919547  T
Q  153 tgctgatgacttgctagatgaatttgttattgaaggcatgcgacacagaatgaaagcacgtaagaagaacaaagtgtcaaaggtattgcattccttatct 252  Q
    ||||||||||||||| ||||||||||||||| | |  ||| |||||| |||  | | |  | | |||||||||||  |||||||| | ||||||||||||    
T  3919546 tgctgatgacttgctcgatgaatttgttattcacgatatgagacacaaaattgaggaagctgataagaacaaagtaacaaaggtacttcattccttatct 3919447  T
Q  253 cc-nnnnnnnttgctttttgccgtaaaatggctcgagagattgaaaaaataagaaaaatatttaatgatgt 322  Q
    ||        |||||||| |||||||||||||||  |||||||||||| ||  || || ||||||||||||    
T  3919446 ccaaacagatttgcttttcgccgtaaaatggctcatgagattgaaaaactacaaacaaaatttaatgatgt 3919376  T

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Target: scaffold0065 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 52 - 199
Target Start/End: Original strand, 45071 - 45221
Alignment:
Q  52 gttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactca---atgatgtgcttc 148  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||| ||||||  |||| ||| ||||||||||| ||||||||||   ||||||||||||    
T  45071 gttgaatccgtcagagctgtgctccttgatgctgaggagaaacaacaacaaagtcatggtgtgcaaaactggataagaagactcaaagatgatgtgcttc 45170  T
Q  149 atcctgctgatgacttgctagatgaatttgttattgaaggcatgcgacaca 199  Q
    ||||||||||||| |||||||||||||||  |||||||| |||| ||||||    
T  45171 atcctgctgatgatttgctagatgaattttctattgaagacatgagacaca 45221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 52 - 187
Target Start/End: Original strand, 50240 - 50378
Alignment:
Q  52 gttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactca---atgatgtgcttc 148  Q
    ||||||||| ||  |||||||||||| |||||||| ||||||||||| ||||   |||||||||||| |||||| ||||||||||   ||||||| ||||    
T  50240 gttgaatccgtctgagctgtgctcctcgatgctgaagagaaacaagagcaaagtaatgctgtacaaatctggataagaagactcaaagatgatgtacttc 50339  T
Q  149 atcctgctgatgacttgctagatgaatttgttattgaag 187  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  50340 atcctgctgatgacttgctagataaatttcttattgaag 50378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 319
Target Start/End: Original strand, 45285 - 45342
Alignment:
Q  262 ttgctttttgccgtaaaatggctcgagagattgaaaaaataagaaaaatatttaatga 319  Q
    |||||||| |||||||||||||||  |||||||||||||||  || || |||||||||    
T  45285 ttgcttttagccgtaaaatggctcatgagattgaaaaaatacaaacaaaatttaatga 45342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 322
Target Start/End: Original strand, 50454 - 50513
Alignment:
Q  262 ttgctttttgccgtaaaatggctcgagagattgaaaaaataagaaaaatatttaatgatgt 322  Q
    |||||||| ||| |||||||||||  |||||||||||||| | ||||| ||||||||||||    
T  50454 ttgcttttcgccttaaaatggctcatgagattgaaaaaat-acaaaaaaatttaatgatgt 50513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 47 - 187
Target Start/End: Original strand, 18355350 - 18355490
Alignment:
Q  47 agacggttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactcaatgatgtgct 146  Q
    |||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||  ||||||||||||  |||| ||||||| ||||| ||  ||||    
T  18355350 agacagttgaatccatcaaagctgtgctccttgatgctgaagacaaacaagagcaaagtcatgctgtacaactctgggttagaaggctcaacgacctgct 18355449  T
Q  147 tcatcctgctgatgacttgctagatgaatttgttattgaag 187  Q
    || |||||| ||||| ||| ||||||||||| |||||||||    
T  18355450 tcttcctgcagatgatttgatagatgaattttttattgaag 18355490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 10756160 - 10756020
Alignment:
Q  47 agacggttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactcaatgatgtgct 146  Q
    |||| ||||||||||||| |||||||||||||||||||||| | ||||||||  |||  | |  ||||||||||||| ||| ||| ||||| ||||||||    
T  10756160 agacagttgaatccatcagagctgtgctccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgggttacaaggctcaaagatgtgct 10756061  T
Q  147 tcatcctgctgatgacttgctagatgaatttgttattgaag 187  Q
    |  | |||| ||||| ||| ||||||||||| |||||||||    
T  10756060 tgttgctgcagatgatttgatagatgaatttcttattgaag 10756020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 10755940 - 10755884
Alignment:
Q  266 tttttgccgtaaaatggctcgagagattgaaaaaataagaaaaatatttaatgatgt 322  Q
    |||||| ||||||||||||| ||||||||||||||||  ||||   |||||||||||    
T  10755940 tttttgtcgtaaaatggctctagagattgaaaaaatacaaaaaggttttaatgatgt 10755884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 8572660 - 8572790
Alignment:
Q  47 agacggttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactcaatgatgtgct 146  Q
    |||| ||||||||||||| ||||| |||||||||||||||| | ||||||||  |||  | |  ||||||||||||| ||| ||| ||||| ||||||||    
T  8572660 agacagttgaatccatcagagctgcgctccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgggttacaaggctcaaagatgtgct 8572759  T
Q  147 tcatcctgctgatgacttgctagatgaattt 177  Q
    |  | |||| ||||| ||| |||||||||||    
T  8572760 tgttgctgcagatgatttgatagatgaattt 8572790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 177
Target Start/End: Original strand, 28698620 - 28698750
Alignment:
Q  47 agacggttgaatccatcaaagctgtgctccttgatgctgaggagaaacaagaacaaaaccatgctgtacaaaactggattagaagactcaatgatgtgct 146  Q
    |||| ||||||||||||| ||||| |||||||||||||||| | ||||||||  |||  | |  ||||||||||||| ||| ||| ||||| ||||||||    
T  28698620 agacagttgaatccatcagagctgcgctccttgatgctgagaacaaacaagagaaaagtctttgtgtacaaaactgggttacaaggctcaaagatgtgct 28698719  T
Q  147 tcatcctgctgatgacttgctagatgaattt 177  Q
    |  | |||| ||||| ||| |||||||||||    
T  28698720 tgttgctgcagatgatttgatagatgaattt 28698750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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