View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_low_25 (Length: 339)
Name: NF9578_low_25
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 6 - 301
Target Start/End: Complemental strand, 13918527 - 13918231
Alignment:
| Q |
6 |
tttggtggtgtgtgtataagtgtatatatatgctttccttaacattaaaagaaaggcttctttagaagttataaagttatgttgcattattatcaaaaga |
105 |
Q |
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| T |
13918527 |
tttggtggtgtgtgtataagtgaatatatatgctttccttaacattaaaagaaaggcttctttagaagttataaagttatgttgcattattatcaaaaga |
13918428 |
T |
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| Q |
106 |
gataatggttccaaaaggcaaaactataacatttgaagcatacaactccatacaataatgtgcaagaatagacctaaaaagttcttaattttgaaagaaa |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13918427 |
gataatggttccaaaaggcaaaactataacatttgaagcgtacaactccatacaataatgtgcaagaatagacctaaaaagttcttaattttgaaagaaa |
13918328 |
T |
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| Q |
206 |
ggcccaaaaataattgtgtaata-nnnnnnnnaatggaaaatgaaatgtaataattattatatcagtgtttccatcatgggatactcaaactcaaat |
301 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13918327 |
ggcccaaaagtaattgtgtaatatttttttttaatggaaaatgaaatgtaataattattatatcagtgtttccatcatggcatactcaaactcaaat |
13918231 |
T |
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