View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9578_low_27 (Length: 324)

Name: NF9578_low_27
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9578_low_27
NF9578_low_27
[»] chr4 (1 HSPs)
chr4 (92-311)||(15530828-15531048)
[»] chr5 (1 HSPs)
chr5 (92-311)||(39884935-39885156)
[»] chr3 (3 HSPs)
chr3 (92-311)||(29703152-29703373)
chr3 (95-182)||(36949857-36949944)
chr3 (95-182)||(53282586-53282673)
[»] chr8 (1 HSPs)
chr8 (95-262)||(3879079-3879247)
[»] chr2 (2 HSPs)
chr2 (95-262)||(7089507-7089677)
chr2 (95-262)||(33754682-33754852)
[»] chr6 (2 HSPs)
chr6 (108-159)||(932957-933008)
chr6 (107-151)||(28137000-28137044)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 92 - 311
Target Start/End: Complemental strand, 15531048 - 15530828
Alignment:
Q  92 tgaaattatatttcgataaaaacacttctaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttcnnnnnnnn 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  15531048 tgaaattatatttcgataaaaacacttctaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttcaaaaaaaa 15530949  T
Q  192 nc-tacatgaaataaatctaaattgtctaagtgaaagtaactacataagattaatttctttagtatatcttcctctttcatcttcttccattgaagatga 290  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15530948 aagtacatgaaataaatctaaattgtctaagtgaaagtaactacataagattaatttctttagtatatcttcctctttcatcttcttccattgaagatga 15530849  T
Q  291 acaaattcttccattcaagaa 311  Q
    |||||||||||||||||||||    
T  15530848 acaaattcttccattcaagaa 15530828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 92 - 311
Target Start/End: Original strand, 39884935 - 39885156
Alignment:
Q  92 tgaaattatatttcgataaaaacacttctaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttcnnnnnnnn 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  39884935 tgaaattatatttcgataaaaacacttctaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttcaaaaaaaa 39885034  T
Q  192 n--ctacatgaaataaatctaaattgtctaagtgaaagtaactacataagattaatttctttagtatatcttcctctttcatcttcttccattgaagatg 289  Q
       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39885035 aaactacatgaaataaatctaaactgtctaagtgaaagtaactacataagattaatttcttcagtatatcttcctctttcatcttcttccattgaagatg 39885134  T
Q  290 aacaaattcttccattcaagaa 311  Q
    ||||||||||||||||||||||    
T  39885135 aacaaattcttccattcaagaa 39885156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 92 - 311
Target Start/End: Complemental strand, 29703373 - 29703152
Alignment:
Q  92 tgaaattatatttcgataaaaacacttctaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttcnnnnnnnn 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            
T  29703373 tgaaattatatttcgataaaaacacttctaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttcaaaaaaaa 29703274  T
Q  192 n--ctacatgaaataaatctaaattgtctaagtgaaagtaactacataagattaatttctttagtatatcttcctctttcatcttcttccattgaagatg 289  Q
       |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29703273 aaactacatgaaataaatctaaactgtctaagtgaaagtaactacataagattaatttcttcagtatatcttcctctttcatcttcttccattgaagatg 29703174  T
Q  290 aacaaattcttccattcaagaa 311  Q
    ||||||||||||||||||||||    
T  29703173 aacaaattcttccattcaagaa 29703152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 95 - 182
Target Start/End: Complemental strand, 36949944 - 36949857
Alignment:
Q  95 aattatatttcgataaaaacacttctaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaacctt 182  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36949944 aattacatttcgataaaaacacttccaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaacctt 36949857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 53282586 - 53282673
Alignment:
Q  95 aattatatttcgataaaaacacttctaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaacctt 182  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53282586 aattacatttcgataaaaacacttccaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaacctt 53282673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 95 - 262
Target Start/End: Complemental strand, 3879247 - 3879079
Alignment:
Q  95 aattatatttcgataaaaacacttctaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttc-nnnnnnnnnc 193  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |    
T  3879247 aattacatttcgataaaaacacttccaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttcaaaaaaaaaac 3879148  T
Q  194 tacatgaaataaatctaaattgtctaagtgaaagtaactacataagattaatttctttagtatatcttc 262  Q
    ||||| ||||||||||||| ||||||  ||||||||| ||| |||||||||||||||||||||||||||    
T  3879147 tacataaaataaatctaaactgtctacatgaaagtaattacgtaagattaatttctttagtatatcttc 3879079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 95 - 262
Target Start/End: Original strand, 7089507 - 7089677
Alignment:
Q  95 aattatatttcgataaaaacacttctaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttc---nnnnnnnn 191  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  7089507 aattacatttcgataaaaacacttccaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttcaaaaaaaaaaa 7089606  T
Q  192 nctacatgaaataaatctaaattgtctaagtgaaagtaactacataagattaatttctttagtatatcttc 262  Q
     |||||| ||||||||||||| ||||||  ||||||||| ||| |||||||||||||||||||||||||||    
T  7089607 actacataaaataaatctaaactgtctacatgaaagtaattacgtaagattaatttctttagtatatcttc 7089677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 95 - 262
Target Start/End: Complemental strand, 33754852 - 33754682
Alignment:
Q  95 aattatatttcgataaaaacacttctaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttc---nnnnnnnn 191  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  33754852 aattacatttcgataaaaacacttccaatttcaatttctcattatttacatcacaaatcatcataaaagattcaatttctcaaaccttcaaaaaaaaaaa 33754753  T
Q  192 nctacatgaaataaatctaaattgtctaagtgaaagtaactacataagattaatttctttagtatatcttc 262  Q
     |||||| ||||||||||||| ||||||  ||||||||| ||| |||||||||||||||||||||||||||    
T  33754752 actacataaaataaatctaaactgtctacatgaaagtaattacgtaagattaatttctttagtatatcttc 33754682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 932957 - 933008
Alignment:
Q  108 taaaaacacttctaatttcaatttctcattatttacatcacaaatcatcata 159  Q
    ||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  932957 taaaaacacttctaatttcaattcctcattatttacatcacaaagcatcata 933008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 28137044 - 28137000
Alignment:
Q  107 ataaaaacacttctaatttcaatttctcattatttacatcacaaa 151  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||    
T  28137044 ataaaaacacttctaatttcaattcctctttatttacatcacaaa 28137000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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