View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_low_28 (Length: 312)
Name: NF9578_low_28
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 295
Target Start/End: Complemental strand, 47292554 - 47292277
Alignment:
| Q |
18 |
ttaacaattcgccacttgttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtggaaatccatttgcttatgc |
117 |
Q |
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| T |
47292554 |
ttaacaattcgccacttgttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtggaaatccatttggttatgc |
47292455 |
T |
|
| Q |
118 |
agtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292454 |
agtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaact |
47292355 |
T |
|
| Q |
218 |
gtaaggtcttgtgttatctcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaaggggtgtat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292354 |
gtaaggtcttgtgttatctcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaaggggtgtat |
47292277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 295
Target Start/End: Complemental strand, 47299163 - 47298884
Alignment:
| Q |
16 |
tgttaacaattcgccacttgttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtggaaatccatttgcttat |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||| |
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| T |
47299163 |
tgttaacaattcgccacttgttggatactacggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctttgtggaaacccatttggttat |
47299064 |
T |
|
| Q |
116 |
gcagtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaa |
215 |
Q |
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| T |
47299063 |
gcagtggagttggtaagaaaattaaaagctgaagttacagaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaa |
47298964 |
T |
|
| Q |
216 |
ctgtaaggtcttgtgttatctcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaaggggtgtat |
295 |
Q |
| |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
47298963 |
ctgtaaggtcttgtattatttcagatttgactcgtgctaggctctcagaagtgaatttcggatggggtgaaggggtgtat |
47298884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 47267695 - 47267926
Alignment:
| Q |
19 |
taacaattcgccacttgttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtggaaatccatttgcttatgca |
118 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||| |
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| T |
47267695 |
taacaattcgccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttatgct |
47267794 |
T |
|
| Q |
119 |
gtggagttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactg |
218 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||||||||||||| || |||||||||||||||||| |
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| T |
47267795 |
gtggagttggtaagaaaattaaaagctgaagttacagaggaatatatgcattctgtagcagatcttatggttattaaagagcggtgtttatttacaacta |
47267894 |
T |
|
| Q |
219 |
taaggtcttgtgttatctcagatttgactcgt |
250 |
Q |
| |
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|||||||||||||| | |||||| | |||||| |
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| T |
47267895 |
taaggtcttgtgttgtttcagatgtaactcgt |
47267926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 47279072 - 47279343
Alignment:
| Q |
24 |
attcgccacttgttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtggaaatccatttgcttatgcagtgga |
123 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||| ||| || || |||||||| ||||||||||||||||||||||| || | ||||| |||||| |
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| T |
47279072 |
attcgccacttgttggatattatggtaactgttttgctttcccggctgctgtcaccaccgcagggaagctttgtggaaatcctttaggttatggagtgga |
47279171 |
T |
|
| Q |
124 |
gttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactgtaagg |
223 |
Q |
| |
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||| |||||||| ||||||| ||||||| || ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
47279172 |
attgataagaaaagcaaaagctcaagttacagaagaatacatgcattctttggcagatcttatggttattaaggaacgatgtttatttacaacaataaga |
47279271 |
T |
|
| Q |
224 |
tcttgtgttatctcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaaggggtgtat |
295 |
Q |
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||||||||| | ||||| ||||||||||||| | | |||||||||||||||| |||||||| | ||||||| |
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| T |
47279272 |
tcttgtgttgtatcagacttgactcgtgctaagtacgcagaagtgaattttggatggggtgaggcggtgtat |
47279343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 47283665 - 47283936
Alignment:
| Q |
24 |
attcgccacttgttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtggaaatccatttgcttatgcagtgga |
123 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| || || |||||||| |||||||||||||||||||| || || | |||||||||||| |
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| T |
47283665 |
attcgccacttgttggatattatggtaactgttttgctttcccggctgctgtcaccaccgcagggaagctttgtggaaaccctttaggttatgcagtgga |
47283764 |
T |
|
| Q |
124 |
gttggtaagaaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactgtaagg |
223 |
Q |
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||| |||||||| ||||||| ||||||| || ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
47283765 |
attgataagaaaagcaaaagctcaagttacagaagaatacatgcattctttggcagatcttatggttattaaggaacgatgtttatttacaacagtaaga |
47283864 |
T |
|
| Q |
224 |
tcttgtgttatctcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaaggggtgtat |
295 |
Q |
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|| |||||| | ||||| ||||||||||||| | | ||||||||||||| || |||||||| | ||||||| |
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| T |
47283865 |
tcgtgtgttgtatcagacttgactcgtgctaagtacgcagaagtgaatttcggatggggtgaggcggtgtat |
47283936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 33 - 286
Target Start/End: Original strand, 47242805 - 47243058
Alignment:
| Q |
33 |
ttgttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtggaaatccatttgcttatgcagtggagttggtaag |
132 |
Q |
| |
|
||||||||||||||||||| || |||||| | | ||||| |||||||| ||| | ||||||||||||| | ||| | |||||||||||||||| |||| |
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| T |
47242805 |
ttgttggatattacggtaattgcattgctttctcggcggctgtcaccaccgcaaaggagctttgtggaaaccaattaggttatgcagtggagttgataag |
47242904 |
T |
|
| Q |
133 |
aaaattaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactgtaaggtcttgtgtt |
232 |
Q |
| |
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|||| |||| || ||||||| |||||||||||||||||| | || ||| ||||||||||||||||||| |||||||||||||||| ||| ||||| | |
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| T |
47242905 |
aaaagcaaaaactcaagttacagaggaatacatgcattctttagcagattttatggttattaaggaacgatgtttatttacaactggaagaacttgtata |
47243004 |
T |
|
| Q |
233 |
atctcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaa |
286 |
Q |
| |
|
| || |||| ||||||||||| |||||||||||||||| || ||||||||| |
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| T |
47243005 |
gtgtcggattggactcgtgctaatttctcagaagtgaatttcggatggggtgaa |
47243058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 36 - 287
Target Start/End: Original strand, 47256935 - 47257186
Alignment:
| Q |
36 |
ttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtggaaatccatttgcttatgcagtggagttggtaagaaa |
135 |
Q |
| |
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|||||||||| || |||||| |||||| | | ||||| |||||||| ||| | ||||||||||||| | ||| | |||||||||||||||| ||||||| |
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| T |
47256935 |
ttggatattatggcaactgtattgctttctcggcggcagtcaccaccgcaaaggagctttgtggaaaccaattaggttatgcagtggagttgataagaaa |
47257034 |
T |
|
| Q |
136 |
attaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactgtaaggtcttgtgttatc |
235 |
Q |
| |
|
| ||||||| ||||||| ||| | |||||||| || |||| ||| ||||||||||||||||||| ||||||||||||| | ||| | ||| | | |
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| T |
47257035 |
agcaaaagctcaagttacagagaagtacatgcactcattggcagattttatggttattaaggaacgatgtttatttacaaagggaagaacatgtatggtg |
47257134 |
T |
|
| Q |
236 |
tcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaag |
287 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||||| || |||||||||| |
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| T |
47257135 |
tcagattggactcgtgctaagttctcagaagtgaatttcggatggggtgaag |
47257186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 36 - 286
Target Start/End: Original strand, 32731475 - 32731725
Alignment:
| Q |
36 |
ttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtggaaatccatttgcttatgcagtggagttggtaagaaa |
135 |
Q |
| |
|
|||||||||||||||| ||| |||||| | | ||||| |||||||| ||| | ||||||||||||| | ||| | |||||||||||||||| ||||||| |
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| T |
32731475 |
ttggatattacggtaattgtattgctttctcggcggctgtcaccaccgcaaaggagctttgtggaaaccaattaggttatgcagtggagttgataagaaa |
32731574 |
T |
|
| Q |
136 |
attaaaagctgaagttactgaggaatacatgcattctgtggccgatcttatggttattaaggaacggtgtttatttacaactgtaaggtcttgtgttatc |
235 |
Q |
| |
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| |||| || ||||||| |||||||||||||||||| | || ||| |||||||||||||||||| |||||||||||||| | ||| ||||| | | |
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| T |
32731575 |
agcaaaaactcaagttacagaggaatacatgcattctttagcagattgtatggttattaaggaacgatgtttatttacaaccggaagaacttgtatggtg |
32731674 |
T |
|
| Q |
236 |
tcagatttgactcgtgctaggctctcagaagtgaattttggttggggtgaa |
286 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||| || ||||||||| |
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|
| T |
32731675 |
tcagattggactcgtgctaatttatcagaagtgaatttcggatggggtgaa |
32731725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 20519638 - 20519733
Alignment:
| Q |
190 |
tattaaggaacggtgtttatttacaactgtaaggtcttgtgttatctcagatttgactcgtgctaggctctcagaagtgaattttggttggggtga |
285 |
Q |
| |
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|||||||||||| |||||| ||||||||||||| | ||||||||| ||||||||||| ||||||| | || ||||||||||||||| |||||||| |
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| T |
20519638 |
tattaaggaacgatgtttacttacaactgtaagttgttgtgttatgtcagatttgacacgtgctaagttcagagaagtgaattttggatggggtga |
20519733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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