View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9578_low_31 (Length: 283)

Name: NF9578_low_31
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9578_low_31
NF9578_low_31
[»] chr7 (11 HSPs)
chr7 (1-267)||(9634204-9634470)
chr7 (12-143)||(7229747-7229877)
chr7 (39-267)||(21935653-21935896)
chr7 (73-150)||(23008904-23008981)
chr7 (73-150)||(9652914-9652991)
chr7 (72-140)||(11968830-11968898)
chr7 (72-140)||(11976825-11976893)
chr7 (24-117)||(16177544-16177636)
chr7 (73-142)||(5223661-5223730)
chr7 (73-150)||(19018899-19018976)
chr7 (23-110)||(28489899-28489986)
[»] chr4 (7 HSPs)
chr4 (1-267)||(13602776-13603042)
chr4 (27-114)||(3462733-3462820)
chr4 (24-143)||(17278662-17278781)
chr4 (31-143)||(12070733-12070847)
chr4 (73-143)||(22125576-22125646)
chr4 (73-150)||(13523939-13524016)
chr4 (222-267)||(17278873-17278918)
[»] chr2 (9 HSPs)
chr2 (23-143)||(18371542-18371662)
chr2 (23-143)||(18830679-18830800)
chr2 (38-121)||(27180391-27180475)
chr2 (38-121)||(27829933-27830017)
chr2 (175-267)||(21872487-21872579)
chr2 (23-136)||(27878244-27878358)
chr2 (72-143)||(21872373-21872441)
chr2 (72-140)||(27488531-27488599)
chr2 (79-143)||(17984334-17984398)
[»] chr3 (7 HSPs)
chr3 (8-143)||(14800831-14800966)
chr3 (42-143)||(26883565-26883667)
chr3 (23-109)||(8364535-8364622)
chr3 (72-114)||(21515865-21515907)
chr3 (73-149)||(25922128-25922204)
chr3 (28-113)||(8815954-8816037)
chr3 (78-143)||(15485871-15485936)
[»] chr8 (7 HSPs)
chr8 (32-140)||(28914702-28914811)
chr8 (25-141)||(8989337-8989455)
chr8 (23-267)||(22471282-22471541)
chr8 (53-137)||(40545629-40545713)
chr8 (72-143)||(24175555-24175626)
chr8 (76-141)||(16647784-16647849)
chr8 (73-114)||(22741738-22741779)
[»] chr1 (9 HSPs)
chr1 (24-117)||(22586351-22586444)
chr1 (23-140)||(18895629-18895746)
chr1 (87-143)||(15851674-15851730)
chr1 (76-143)||(17317266-17317333)
chr1 (73-150)||(25380358-25380435)
chr1 (73-150)||(13332759-13332837)
chr1 (73-143)||(18576931-18577001)
chr1 (73-150)||(17199730-17199807)
chr1 (73-141)||(20405592-20405660)
[»] scaffold0004 (1 HSPs)
scaffold0004 (32-110)||(225699-225777)
[»] chr6 (8 HSPs)
chr6 (31-124)||(23143058-23143149)
chr6 (73-143)||(24005379-24005449)
chr6 (23-143)||(22886073-22886194)
chr6 (23-143)||(22904029-22904150)
chr6 (54-109)||(22724641-22724696)
chr6 (73-143)||(14881633-14881703)
chr6 (73-143)||(22728100-22728170)
chr6 (73-143)||(25930990-25931060)
[»] chr5 (6 HSPs)
chr5 (73-143)||(20057119-20057189)
chr5 (37-117)||(17349537-17349617)
chr5 (36-170)||(24189317-24189452)
chr5 (73-150)||(22847323-22847400)
chr5 (72-124)||(23190086-23190138)
chr5 (73-150)||(29831130-29831207)
[»] scaffold0054 (1 HSPs)
scaffold0054 (23-143)||(9589-9710)
[»] scaffold0111 (1 HSPs)
scaffold0111 (73-143)||(26070-26140)
[»] scaffold0023 (1 HSPs)
scaffold0023 (32-117)||(109376-109461)
[»] scaffold0125 (1 HSPs)
scaffold0125 (73-141)||(6479-6547)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 9634204 - 9634470
Alignment:
Q  1 tgctcaagattgaaaattgggctatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgtttt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  9634204 tgctcaagattgaaaattgggttatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgataaagatgtttt 9634303  T
Q  101 atatcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaactaaattcccgtgttcttctcttaaatgattttcacattcataattgaatatg 200  Q
     ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9634304 ctatcaagaagagtggaggtatcctgaagcgagggcgaaagggtaaactaaattcccgtgttcttctcttaaatgattttcacattcataattgaatatg 9634403  T
Q  201 atttctatgtatgaaactatgttgatttaattgtgaattcttttgttagcttaacctaatctcaatt 267  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9634404 atttctatgtatgaaaatatgttgatttaattgtgaattcttttgttagcttaacctaatctcaatt 9634470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 143
Target Start/End: Complemental strand, 7229877 - 7229747
Alignment:
Q  12 gaaaattgggctatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaag 111  Q
    ||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  | || ||||||||||    
T  7229877 gaaaattagggtatcgaaggaatcttttgtaatcataacaatttgtaaacatttttcaacatagtggaagtccttgatagagagatattctatcaagaag 7229778  T
Q  112 agtggaggtatcccgaagcaaggacgaaaggg 143  Q
    || ||| ||| |||||||| || || ||||||    
T  7229777 agggga-gtaccccgaagcgagaacaaaaggg 7229747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 39 - 267
Target Start/End: Complemental strand, 21935896 - 21935653
Alignment:
Q  39 tgtaatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacg 137  Q
    ||||||| ||| |||||||||||||||||||||| ||||| |||||||||||| ||| ||||| |||||||||||||  ||||| || ||| ||| ||||    
T  21935896 tgtaatcataaaaatttgtaaacatttttcaacaatagtgtaagtccttgataaagatgttttctatcaagaagagtaaaggtaccctgaaacaatgacg 21935797  T
Q  138 aaagggtaaac----taaattcccgtgttcttctcttaaat---------gattttcacattcataattgaatatgatttctatgtatgaaactatgttg 224  Q
    |||||| || |    ||||||||  ||||||||||||   |         ||||||  |||||||||||| ||||||||||||||| |||||| || |||    
T  21935796 aaaggggaaccattataaattccgatgttcttctcttccctatcctcttagatttttgcattcataattgtatatgatttctatgtttgaaaccattttg 21935697  T
Q  225 atttaattgtgaattcttttgtt-agcttaacctaatctcaatt 267  Q
    || | ||||||| | ||||| ||   ||||||||||||||||||    
T  21935696 atctgattgtgattacttttattgcacttaacctaatctcaatt 21935653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 23008904 - 23008981
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaacta 150  Q
    ||||||||||||||| |||||||||||| |||||||||||||  | ||| ||||| || |||| ||||||| ||||||    
T  23008904 tagtggaagtccttggtagagacgttttctatcaagaagagtaaacgtaccccgaggcgaggatgaaaggggaaacta 23008981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 9652991 - 9652914
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaacta 150  Q
    ||||||||||||||| | ||| ||||||  |||||||||||| || ||| ||| |||||| ||||||||||| |||||    
T  9652991 tagtggaagtccttggtggaggcgttttccatcaagaagagtagacgtagcccaaagcaatgacgaaagggtgaacta 9652914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 11968830 - 11968898
Alignment:
Q  72 atagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaa 140  Q
    ||||||||||| ||||||||||||||||| || |||||||||| || ||| | |||||| |||| ||||    
T  11968830 atagtggaagttcttgatagagacgttttctaccaagaagagtagacgtacctcgaagcgaggatgaaa 11968898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 11976825 - 11976893
Alignment:
Q  72 atagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaa 140  Q
    ||||||||||| ||||||| ||| ||||| ||||||||||||| || ||| | |||||| |||||||||    
T  11976825 atagtggaagttcttgataaagatgttttctatcaagaagagtagacgtacctcgaagcgaggacgaaa 11976893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 16177544 - 16177636
Alignment:
Q  24 atcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtgg-aagtccttgatagagacgttttatatcaagaagagtgga 117  Q
    ||||| |||||||||||||||| |||||  |||||  ||||||||| |||||||| |||| ||||||||||  ||||| ||| ||||| ||||||    
T  16177544 atcgatggaatcttttgtaatcataaca--ttgtatccatttttcatcatagtggaaagttcttgatagaggtgttttctattaagaaaagtgga 16177636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 142
Target Start/End: Complemental strand, 5223730 - 5223661
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaagg 142  Q
    ||||||| | ||||| ||||||||||||  | |||||||||| || ||| |||||||| |||||||||||    
T  5223730 tagtggatgaccttggtagagacgtttttcaccaagaagagttgacgtaacccgaagcgaggacgaaagg 5223661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 19018899 - 19018976
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaacta 150  Q
    ||||||||||||||| | |||||||||   |||||||| ||| || |||||||||||  ||||||||| || ||||||    
T  19018899 tagtggaagtccttggtggagacgtttaccatcaagaaaagtagatgtatcccgaagtgaggacgaaatggaaaacta 19018976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 28489899 - 28489986
Alignment:
Q  23 tatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaac-atagtggaagtccttgatagagacgttttatatcaagaa 110  Q
    |||||| |||||  ||| ||||| |||||||||||||||| || ||||| ||| | ||||||||||||||||| || || |||||||||    
T  28489899 tatcgagggaattctttctaatcataacaatttgtaaacaattctcaacaataat-gaagtccttgatagagatgtattctatcaagaa 28489986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 13603042 - 13602776
Alignment:
Q  1 tgctcaagattgaaaattgggctatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgtttt 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  13603042 tgctcaagattgaaaattgggttatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgataaagatgtttt 13602943  T
Q  101 atatcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaactaaattcccgtgttcttctcttaaatgattttcacattcataattgaatatg 200  Q
     ||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13602942 ctatcaagaagagtggaggtatcctgaagcgagggcgaaagggtaaactaaattcccgtgttcttctcttaaatgattttcacattcataattgaatatg 13602843  T
Q  201 atttctatgtatgaaactatgttgatttaattgtgaattcttttgttagcttaacctaatctcaatt 267  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13602842 atttctatgtatgaaaatatgttgatttaattgtgaattcttttgttagcttaacctaatctcaatt 13602776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 27 - 114
Target Start/End: Complemental strand, 3462820 - 3462733
Alignment:
Q  27 gaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaagagt 114  Q
    |||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  3462820 gaaggaatcttttgcaactataacaatttgtaaacatttttcaacatagtggaagtccttgatagagacattttctatcaagaagagt 3462733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 17278662 - 17278781
Alignment:
Q  24 atcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatc 123  Q
    ||||||||||||||||||||||  |||||||||||||||||||||| ||||||| ||| || ||  |||||| |||| ||||| |||||| ||| ||| |    
T  17278662 atcgaaggaatcttttgtaatcacaacaatttgtaaacatttttcatcatagtgaaagaccgtgtcagagacattttctatcacgaagagaggatgtacc 17278761  T
Q  124 ccgaagcaaggacgaaaggg 143  Q
    | ||| | ||||||||||||    
T  17278762 ctgaatcgaggacgaaaggg 17278781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 12070733 - 12070847
Alignment:
Q  31 gaatcttttgtaatcttaacaatttgtaaacatttttcaac-atagtggaagtccttgatagagacgttttatatcaagaagagt-ggaggtatcccgaa 128  Q
    ||||||||||||||| ||| |||||||  |||||||||||| |||| |||| ||||||||| | ||||||| ||||||||||| | ||||||| | ||||    
T  12070733 gaatcttttgtaatcataataatttgttcacatttttcaacaatagcggaaatccttgataaaaacgttttctatcaagaagactgggaggtacctcgaa 12070832  T
Q  129 gcaaggacgaaaggg 143  Q
    || ||||||||||||    
T  12070833 gcgaggacgaaaggg 12070847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 22125646 - 22125576
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |||| || |||||||||    
T  22125646 tagtggaagtgcttgatagagacgttttctatcaagaagggtggaggtatcccaaagccagaacgaaaggg 22125576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 13524016 - 13523939
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaacta 150  Q
    ||||||||||||||| | ||| ||||||  |||||||||||| || ||| ||| |||||| ||||||||||| |||||    
T  13524016 tagtggaagtccttggtggaggcgttttccatcaagaagagtagacgtagcccaaagcaatgacgaaagggtgaacta 13523939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 17278873 - 17278918
Alignment:
Q  222 ttgatttaattgtgaattcttttgttagcttaacctaatctcaatt 267  Q
    ||||||| |||||||||| |||||||  ||||||||||||||||||    
T  17278873 ttgatttgattgtgaattattttgtttacttaacctaatctcaatt 17278918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 6e-43; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 18371542 - 18371662
Alignment:
Q  23 tatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaagagtggaggtat 122  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||| ||||||||     
T  18371542 tatcgaaagaatcttttgtaatcataacaatttgtaaacatttttcaacatagtggaagtccttgatagagacattttctaacaagaagaatggaggtac 18371641  T
Q  123 cccgaagcaaggacgaaaggg 143  Q
    |||||||| ||||||||||||    
T  18371642 cccgaagcgaggacgaaaggg 18371662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 18830800 - 18830679
Alignment:
Q  23 tatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacgttttatatcaagaagagtggaggta 121  Q
    ||||||||||||||| | ||||| ||||| |||||||||||||||||| | |||||||||||||||||||  ||| ||| ||||||||||||||||||||    
T  18830800 tatcgaaggaatcttctataatcataacagtttgtaaacatttttcaagaatagtggaagtccttgataggaacgatttctatcaagaagagtggaggta 18830701  T
Q  122 tcccgaagcaaggacgaaaggg 143  Q
     ||| || | ||||| ||||||    
T  18830700 ccccaaaacgaggacaaaaggg 18830679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 27180391 - 27180475
Alignment:
Q  38 ttgtaatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacgttttatatcaagaagagtggaggta 121  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||  ||||| ||||  ||||||||||||||    
T  27180391 ttgtaatcataacaatttgtaaatatttttcaacaatagtggaagtccttgatagaggagttttctatcgtgaagagtggaggta 27180475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 27829933 - 27830017
Alignment:
Q  38 ttgtaatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacgttttatatcaagaagagtggaggta 121  Q
    |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||  ||||| ||||  ||||||||||||||    
T  27829933 ttgtaatcataacaatttgtaaatatttttcaacaatagtggaagtccttgatagaggagttttctatcgtgaagagtggaggta 27830017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 267
Target Start/End: Original strand, 21872487 - 21872579
Alignment:
Q  175 gattttcacattcataattgaatatgatttctatgtatgaaactatgttgatttaattgtgaattcttttgttagcttaacctaatctcaatt 267  Q
    |||||||  ||||||||||| ||||||||||||||| |||||| || ||||||| ||||||| |  |||||||  ||||||||||||||||||    
T  21872487 gattttcgtattcataattgtatatgatttctatgtttgaaaccatcttgattttattgtgattatttttgttcacttaacctaatctcaatt 21872579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 27878244 - 27878358
Alignment:
Q  23 tatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacgttttatatcaagaagagtggaggta 121  Q
    |||||| |||||  ||||||||| ||||||||| |||||| ||||| ||| |||||||||||| | ||| |||  |||| |||| |||||| ||||||||    
T  27878244 tatcgagggaattctttgtaatcataacaatttataaacaattttcgacaatagtggaagtccctaatatagattttttttatcgagaagaatggaggta 27878343  T
Q  122 tcccgaagcaaggac 136  Q
     |||||||| |||||    
T  27878344 ccccgaagcgaggac 27878358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 21872373 - 21872441
Alignment:
Q  72 atagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    |||||||||||||||||||||||| |||| ||||   ||||||||| ||| |||||||| ||||||||||||    
T  21872373 atagtggaagtccttgatagagacattttctatc---aagagtggacgtaccccgaagcgaggacgaaaggg 21872441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 27488531 - 27488599
Alignment:
Q  72 atagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaa 140  Q
    |||||||||||||||||||||||||| || ||||| |||||||  | ||| |||||||| || ||||||    
T  27488531 atagtggaagtccttgatagagacgtattctatcaggaagagtaaacgtaccccgaagcgagaacgaaa 27488599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 17984334 - 17984398
Alignment:
Q  79 aagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    ||||||||| |||||| |||||  |||||||||||| |  |||||||||| | ||||||||||||    
T  17984334 aagtccttggtagagaggttttcaatcaagaagagtaggtgtatcccgaaacgaggacgaaaggg 17984398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 6e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 14800831 - 14800966
Alignment:
Q  8 gattgaaaattgggctatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaa 107  Q
    ||||||| ||| || |||| |||||||||||||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||||||||  |||||    
T  14800831 gattgaagattaggttatcaaaggaatcttttgtaaccataacaatttgtaaatatttttcaacatagtggaagttcttgatagagacgttttcaatcaa 14800930  T
Q  108 gaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    |||||||||||||| | |||||| ||||||||||||    
T  14800931 gaagagtggaggtacctcgaagcgaggacgaaaggg 14800966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 26883565 - 26883667
Alignment:
Q  42 aatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaa 140  Q
    |||| ||||||| |||||||| || |||||| ||||||||||||| |||||| ||||||| ||||||||||||| || ||| |||||||| |||||||||    
T  26883565 aatcataacaatatgtaaacaattgtcaacaatagtggaagtcctcgatagatacgttttctatcaagaagagtagacgtaccccgaagcgaggacgaaa 26883664  T
Q  141 ggg 143  Q
    |||    
T  26883665 ggg 26883667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 109
Target Start/End: Original strand, 8364535 - 8364622
Alignment:
Q  23 tatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacgttttatatcaaga 109  Q
    |||||| |||||  |||| |||| ||| |||||||||||| ||||||||| ||||||||||||||||||||| |||||| ||||||||    
T  8364535 tatcgatggaattctttgcaatcataaaaatttgtaaacaattttcaacaatagtggaagtccttgatagaggcgttttttatcaaga 8364622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 21515907 - 21515865
Alignment:
Q  72 atagtggaagtccttgatagagacgttttatatcaagaagagt 114  Q
    ||||||||||||||||||||||| || ||||||||||||||||    
T  21515907 atagtggaagtccttgatagagatgtattatatcaagaagagt 21515865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 25922128 - 25922204
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaact 149  Q
    ||||||||||||||| | ||| ||||||| | |||||||||| || ||| |||||||| ||||| ||||||| ||||    
T  25922128 tagtggaagtccttggtggaggcgttttacaccaagaagagtagacgtagcccgaagcgaggacaaaagggtgaact 25922204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 113
Target Start/End: Complemental strand, 8816037 - 8815954
Alignment:
Q  28 aaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaagag 113  Q
    ||||||||||||||||||  ||||||||||||| |||||||| |  | ||||||  | || |||||||||||| ||||| ||||||    
T  8816037 aaggaatcttttgtaatcacaacaatttgtaaatatttttcatc--aatggaagatcgtggtagagacgttttctatcacgaagag 8815954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 15485936 - 15485871
Alignment:
Q  78 gaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    ||||||||||||||||||||| | |||||||||||||  |  || |||||||  ||||||||||||    
T  15485936 gaagtccttgatagagacgttctctatcaagaagagtatatataccccgaagtgaggacgaaaggg 15485871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 28914811 - 28914702
Alignment:
Q  32 aatcttttgtaatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagc 130  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || |||||| |||||||||  ||||||||| ||||||||    
T  28914811 aatcttttgtaatcataacaatttgtaaacatttttcaacaatagtggaagtccttgataaaggcgttttctatcaagaatggtggaggtaccccgaagc 28914712  T
Q  131 aaggacgaaa 140  Q
    ||||||||||    
T  28914711 aaggacgaaa 28914702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 25 - 141
Target Start/End: Original strand, 8989337 - 8989455
Alignment:
Q  25 tcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtat- 122  Q
    |||| ||||| |||||||||| |||||||||||||| ||||||||| | |||||||||||||||||||||| ||||| |||||||||||||||||||||     
T  8989337 tcgatggaatattttgtaatcataacaatttgtaaatatttttcaataatagtggaagtccttgatagagaagttttctatcaagaagagtggaggtatc 8989436  T
Q  123 cccgaagcaaggacgaaag 141  Q
    |||||||| |||| |||||    
T  8989437 cccgaagcgaggatgaaag 8989455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 22471541 - 22471282
Alignment:
Q  23 tatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaac-atagtggaagtccttgatagagacgttttatatcaagaagagtggaggta 121  Q
    |||||| |||||||||||||||| ||||||||||| || |||||||||| ||||| |||||| || ||||||||||||| ||| || |||||||||||||    
T  22471541 tatcgagggaatcttttgtaatcataacaatttgtgaatatttttcaacaatagtagaagtctttaatagagacgttttctataaaaaagagtggaggta 22471442  T
Q  122 tcccgaagcaaggacgaaagggtaaac-----taaattcccgtgttcttctcttaaat---------gattttcacattcataattgaatatgatttcta 207  Q
     ||| || |||||||||||  |  |||     ||||| |  |||||||||||||  ||          |||||  |||||||||||| ||||||||||||    
T  22471441 ccccaaaacaaggacgaaatagggaaccactgtaaatcctagtgttcttctcttccatatccttttaaatttttgcattcataattgtatatgatttcta 22471342  T
Q  208 tgtatgaaactatgttgatttaattgtgaattcttttgttagcttaacctaatctcaatt 267  Q
    ||| |||||| || ||||||| ||||||| | ||||||||  ||||||||||||||||||    
T  22471341 tgtttgaaacaatcttgatttgattgtgattacttttgttcacttaacctaatctcaatt 22471282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 40545629 - 40545713
Alignment:
Q  53 tttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacg 137  Q
    ||||||||||||||||| ||||||||||  || ||||||||||||||| ||||| |||||  ||| ||| |||||||| ||||||    
T  40545629 tttgtaaacatttttcatcatagtggaaaaccatgatagagacgttttctatcacgaagaaaggacgtaccccgaagcgaggacg 40545713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 24175626 - 24175555
Alignment:
Q  72 atagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    |||||||||||| |||||||||| ||||| ||||||||||| | || ||| |||||||||| || |||||||    
T  24175626 atagtggaagtctttgatagagatgttttctatcaagaagaatagatgtaccccgaagcaaagatgaaaggg 24175555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 16647849 - 16647784
Alignment:
Q  76 tggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaag 141  Q
    |||||||||||| | ||||| ||||  ||||||||||||||||||| | |||||| ||||||||||    
T  16647849 tggaagtccttggtggagacattttccatcaagaagagtggaggtagctcgaagcgaggacgaaag 16647784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 22741738 - 22741779
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagt 114  Q
    |||||||||| |||||||| |||||||| |||||||||||||    
T  22741738 tagtggaagttcttgatagcgacgttttctatcaagaagagt 22741779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 24 - 117
Target Start/End: Complemental strand, 22586444 - 22586351
Alignment:
Q  24 atcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaagagtgga 117  Q
    |||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||  ||| ||||||| |||| ||||||||||||||||    
T  22586444 atcgaaggaatcttttgtaatcataataatttgtaaacattttccaacatagtggaagtatttgctagagactttttctatcaagaagagtgga 22586351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 140
Target Start/End: Complemental strand, 18895746 - 18895629
Alignment:
Q  23 tatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaagagtggaggtat 122  Q
    ||||||| |||| |||||||||| ||| ||||||||| ||||||||||||||||||| |||||||||| ||| ||||  || ||| |||||||| |||||    
T  18895746 tatcgaatgaatattttgtaatcataaaaatttgtaagcatttttcaacatagtggaggtccttgatatagatgtttactaacaataagagtggcggtat 18895647  T
Q  123 cccgaagcaaggacgaaa 140  Q
    | |||||| |||| ||||    
T  18895646 ctcgaagcgaggatgaaa 18895629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 15851730 - 15851674
Alignment:
Q  87 gatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    |||||||||||||| ||||||||| ||||||||||| | |||||||||| |||||||    
T  15851730 gatagagacgttttctatcaagaaaagtggaggtattctgaagcaaggatgaaaggg 15851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 143
Target Start/End: Complemental strand, 17317333 - 17317266
Alignment:
Q  76 tggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    |||||||||||| | ||||||||||  |||||||||||| || ||| |||||||| ||||||||||||    
T  17317333 tggaagtccttggtggagacgttttccatcaagaagagttgacgtagcccgaagcgaggacgaaaggg 17317266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 25380358 - 25380435
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaacta 150  Q
    ||||||||||||| ||| |||| |||||  | |||||||||| || ||| |||||||| ||||||||||||| |||||    
T  25380358 tagtggaagtcctcgatggagatgttttccaccaagaagagtagatgtagcccgaagcgaggacgaaagggtgaacta 25380435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 13332837 - 13332759
Alignment:
Q  73 tagtggaagtccttgatagagacgttttat-atcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaacta 150  Q
    ||||||||||||||  |||||||||||| | | |||||||||  || ||| ||||||||||||| ||||||| ||||||    
T  13332837 tagtggaagtccttagtagagacgtttttttaacaagaagaggagacgtaccccgaagcaaggatgaaaggggaaacta 13332759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 18577001 - 18576931
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    ||||||||||||||  |||||||||||| || |||||||||| || ||| |||||  | ||||||||||||    
T  18577001 tagtggaagtcctttgtagagacgttttctaccaagaagagtagacgtaccccgatacgaggacgaaaggg 18576931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 17199807 - 17199730
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaacta 150  Q
    ||||||||||| ||| | ||| | ||||  |||||||||||| || ||| |||||||| ||||||||||||| |||||    
T  17199807 tagtggaagtcgttggtggaggcattttccatcaagaagagtagatgtagcccgaagcgaggacgaaagggtgaacta 17199730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 20405660 - 20405592
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaag 141  Q
    |||| |||||||||| | |||| |||||  ||||||||||||||| ||| | |||||| ||||||||||    
T  20405660 tagttgaagtccttggtggagatgttttccatcaagaagagtggatgtagctcgaagcgaggacgaaag 20405592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 225699 - 225777
Alignment:
Q  32 aatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaa 110  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  225699 aatcttttgtaatcataacaatttgctaacatttttcaacatagtgaaagtccttgatagagacgttttctatcaagaa 225777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 23143149 - 23143058
Alignment:
Q  31 gaatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcc 124  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||  |   ||||| |||||||||||||||| ||||||    
T  23143149 gaatcttttgtaatcataacaatttgtaaacatttttcaacatagtgtaagtccttgat--atgtgttttctatcaagaagagtggatgtatcc 23143058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 24005449 - 24005379
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    |||||||||||||||| ||||||||||| | |||||||||||||| ||||| | |||||||||||| ||||    
T  24005449 tagtggaagtccttgaaagagacgttttctgtcaagaagagtggatgtatcgcaaagcaaggacgagaggg 24005379  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 22886073 - 22886194
Alignment:
Q  23 tatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacgttttatatcaagaagagtggaggta 121  Q
    |||||| |||||  ||||||||| ||||||||| |||||| ||||||||| ||||  |||| | |||||  |||||||| |||||||||||||  |  ||    
T  22886073 tatcgagggaattatttgtaatcataacaatttctaaacaattttcaacaatagtaaaagttcatgataacgacgttttctatcaagaagagtaaacata 22886172  T
Q  122 tcccgaagcaaggacgaaaggg 143  Q
    || |||||| ||||||||||||    
T  22886173 tctcgaagcgaggacgaaaggg 22886194  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 22904029 - 22904150
Alignment:
Q  23 tatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaaca-tagtggaagtccttgatagagacgttttatatcaagaagagtggaggta 121  Q
    |||||| |||||  ||||||||| ||||||||| |||||| ||||||||| ||||  |||| | |||||  |||||||| ||||||||| |||  |  ||    
T  22904029 tatcgagggaattatttgtaatcctaacaatttctaaacaattttcaacaatagtaaaagttcatgataacgacgttttctatcaagaaaagtaaacata 22904128  T
Q  122 tcccgaagcaaggacgaaaggg 143  Q
    || |||||| ||||||||||||    
T  22904129 tctcgaagcgaggacgaaaggg 22904150  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 22724641 - 22724696
Alignment:
Q  54 ttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaaga 109  Q
    |||||||||||||| | || |||||||| || |||||||||| |||||||||||||    
T  22724641 ttgtaaacattttttatcagagtggaagaccgtgatagagacattttatatcaaga 22724696  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 14881633 - 14881703
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    ||||| |||||||||||||| || |||| ||||||||||||| || |||  ||||| |||||| |||||||    
T  14881633 tagtgaaagtccttgatagatacattttctatcaagaagagtagacgtactccgaaacaaggatgaaaggg 14881703  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 22728170 - 22728100
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    ||||| ||||| ||||||||||| |||| ||||||||||||| || ||| |||||||| | || |||||||    
T  22728170 tagtgaaagtctttgatagagaccttttctatcaagaagagtagatgtaccccgaagcgaagaggaaaggg 22728100  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 25930990 - 25931060
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    ||||||||||||||| | ||| | ||||  |||||||||||| || |||  ||||||||||||||||||||    
T  25930990 tagtggaagtccttggtggagtcattttccatcaagaagagtagacgtaggccgaagcaaggacgaaaggg 25931060  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 20057189 - 20057119
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    |||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||||||||| |||||||    
T  20057189 tagtggaagtccatgatagagacgttctctatcaagaagagtggaggtatcctgaagcaaggatgaaaggg 20057119  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 17349537 - 17349617
Alignment:
Q  37 tttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaagagtgga 117  Q
    ||||||||| ||| ||||||||||||||||||| ||||||| ||||| |||||| | ||||||| |||||| |||||||||    
T  17349537 tttgtaatcataaaaatttgtaaacatttttcatcatagtgaaagtctttgataaatacgttttctatcaaaaagagtgga 17349617  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 170
Target Start/End: Original strand, 24189317 - 24189452
Alignment:
Q  36 ttttgtaatcttaacaatttgtaaacatttttcaacata-gtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaagg 134  Q
    |||||||||| ||| ||||||||||||||| | || | | ||||||||| |||||| |||||| || |||||||||||||  |  || || ||||||||     
T  24189317 ttttgtaatcataaaaatttgtaaacatttctaaaaaaaagtggaagtctttgataaagacgtattttatcaagaagagtaaacataccctgaagcaagt 24189416  T
Q  135 acgaaagggtaaactaaattcccgtgttcttctctt 170  Q
    ||||||||| |||||||||||  ||||||| |||||    
T  24189417 acgaaaggggaaactaaattctggtgttctactctt 24189452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 22847323 - 22847400
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaacta 150  Q
    ||||||||||||||| | ||| ||||||  ||||||||||||||| ||| || |||||  |||||||||||| |||||    
T  22847323 tagtggaagtccttggtggaggcgttttccatcaagaagagtggacgtagcctgaagcggggacgaaagggtgaacta 22847400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 23190138 - 23190086
Alignment:
Q  72 atagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcc 124  Q
    ||||||||||| ||| ||||||||||||| ||||||||||||| || ||||||    
T  23190138 atagtggaagttcttaatagagacgttttctatcaagaagagtagacgtatcc 23190086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Complemental strand, 29831207 - 29831130
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaagggtaaacta 150  Q
    ||||||||||||||| | ||||| || |  ||||||||||||||| |||  ||||||| |||| |||||||| |||||    
T  29831207 tagtggaagtccttggtggagacattctccatcaagaagagtggacgtagaccgaagcgaggaagaaagggtgaacta 29831130  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 9589 - 9710
Alignment:
Q  23 tatcgaaggaatcttttgtaatcttaacaatttgtaaacatttttcaac-atagtggaagtccttgatagagacgttttatatcaagaagagtggaggta 121  Q
    |||||| |||||  ||||||||||||||||||| |||||| |||||||| |||||  |||| | |||||  |||||||| ||||||||| |||  |  ||    
T  9589 tatcgagggaattatttgtaatcttaacaatttctaaacaattttcaacaatagtaaaagttcatgataacgacgttttctatcaagaatagtaaacata 9688  T
Q  122 tcccgaagcaaggacgaaaggg 143  Q
    || |||||| ||||||||||||    
T  9689 tctcgaagcgaggacgaaaggg 9710  T

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Target: scaffold0111 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 26140 - 26070
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaaggg 143  Q
    ||||||||||||||| | ||||| ||||  |||||||||||| || ||| |||||||| ||||||||||||    
T  26140 tagtggaagtccttggtggagacattttccatcaagaagagtagacgtagcccgaagcgaggacgaaaggg 26070  T

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Target: scaffold0023 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 109461 - 109376
Alignment:
Q  32 aatcttttgtaatcttaacaatttgtaaacatttttcaacatagtggaagtccttgatagagacgttttatatcaagaagagtgga 117  Q
    |||||| | ||||| |||| ||||||| |||||||||| |||||||  ||||||||||||||  ||||| | |||| |||||||||    
T  109461 aatcttctataatcataacgatttgtagacatttttcatcatagtgagagtccttgatagaggggttttctgtcaataagagtgga 109376  T

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Target: scaffold0125 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 141
Target Start/End: Original strand, 6479 - 6547
Alignment:
Q  73 tagtggaagtccttgatagagacgttttatatcaagaagagtggaggtatcccgaagcaaggacgaaag 141  Q
    |||||||||| |||| | ||||||||||  ||||||||||||||||||| | |||||  ||||||||||    
T  6479 tagtggaagttcttggtggagacgttttccatcaagaagagtggaggtagctcgaagtgaggacgaaag 6547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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