View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9578_low_32 (Length: 270)
Name: NF9578_low_32
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 38371805 - 38371555
Alignment:
| Q |
14 |
agttccaccacttaatttggagtttattgttgatgtgtcaagtcaagtacttaataagtttttgtttgtctcttagtaaactacaaactagagctattga |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
38371805 |
agttccaccacttaatttggagtttattgttgatgtgtcaagtcaagtacttaataagtttttgtttgtctcctagtaaactaaaaactagagctattga |
38371706 |
T |
|
| Q |
114 |
ataaaagagagggcaaacatctacaacaagagataaccgcttgaacttcaaagacatcttcctcatagacagttttaaaataaactctactcttctgatt |
213 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38371705 |
ataaaagagagggcaaacatttacaacaagagataaccgattgaacttcaaagacatcttcctcatagacagttttaaaataaactctactcttctgatt |
38371606 |
T |
|
| Q |
214 |
aattctcccaaatgcgaagcttattacatgctgcacataattaccacgaaa |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38371605 |
aattctcccaaatgcgaagcttattacatgctgcacataattaccacgaaa |
38371555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University