View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_low_35 (Length: 261)
Name: NF9578_low_35
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 50881507 - 50881273
Alignment:
| Q |
20 |
cgagagttacgggccggtctcatcaggacatggtgtctgatttaatcgggagatagtgccacatgggtctaacattagagttgagaatcacaaaattgga |
119 |
Q |
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| T |
50881507 |
cgagagttacgggccggtctcatcaggacatggtgtctgatttaatcgggagatagtgccacatgggtctaacaatagagttgagaatcacaaaattgga |
50881408 |
T |
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| Q |
120 |
aattttatcagcaccactaattaattgtagtgaggttttggaagaagtttaggtacattacatctatgtactgccggctcttgtcagtagtgcattcaat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50881407 |
aattttatcagcaccactaattaattgtagtgaggttttggaagaagtttaggtacattacatctatgtactgccggctcttgtcagtagtgcattcaat |
50881308 |
T |
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| Q |
220 |
aaggtaagggagactttgatacacatagttctgtg |
254 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
50881307 |
aaggtaagggagactttgatacacatagttttgtg |
50881273 |
T |
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