View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9578_low_40 (Length: 240)

Name: NF9578_low_40
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9578_low_40
NF9578_low_40
[»] chr4 (7 HSPs)
chr4 (1-135)||(2802193-2802324)
chr4 (39-135)||(1678532-1678625)
chr4 (180-224)||(1678670-1678714)
chr4 (1-43)||(1659287-1659329)
chr4 (180-224)||(2802106-2802150)
chr4 (184-224)||(21886432-21886472)
chr4 (184-224)||(21886517-21886557)
[»] chr3 (3 HSPs)
chr3 (192-223)||(35335609-35335640)
chr3 (190-224)||(2401492-2401526)
chr3 (192-224)||(33331963-33331995)
[»] chr7 (1 HSPs)
chr7 (192-224)||(27531860-27531892)
[»] chr6 (1 HSPs)
chr6 (184-224)||(4240933-4240973)


Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 2802324 - 2802193
Alignment:
Q  1 aataagagcaagaaaaatattctggtattgaacctagattagaagacctttagaaatctgagaacattttagaccatgaacttaatggtattggtaagag 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2802324 aataagagcaagaaaaatattctggtattgaacctagcttagaagacctttagaaatctgagaacattttagaccatgaacttaatggtattgttaagag 2802225  T
Q  101 aaaactctattatccaacaataatcataactatga 135  Q
     | |||||||||||   ||||||||||||||||||    
T  2802224 cagactctattatc---caataatcataactatga 2802193  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 135
Target Start/End: Original strand, 1678532 - 1678625
Alignment:
Q  39 ttagaagacctttagaaatctgagaacattttagaccatgaacttaatggtattggtaagagaaaactctattatccaacaataatcataactatga 135  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||    
T  1678532 ttagaaggtctttagaaatctgagaacattttagaccatgaacttaatggtattggtaagagcaaactctattatc---caataatcataactatga 1678625  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 1678670 - 1678714
Alignment:
Q  180 gttagataccgctaataatttgagaaaatgaaagtgattaaatgt 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1678670 gttagataccgctaataatttgagaaaatgaaagtgattaaatgt 1678714  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 1659287 - 1659329
Alignment:
Q  1 aataagagcaagaaaaatattctggtattgaacctagattaga 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  1659287 aataagagcaagaaaaatattctggtattgaacctagattaga 1659329  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 2802150 - 2802106
Alignment:
Q  180 gttagataccgctaataatttgagaaaatgaaagtgattaaatgt 224  Q
    |||||||||||||||||||||| || |||||||||||||||||||    
T  2802150 gttagataccgctaataatttgggagaatgaaagtgattaaatgt 2802106  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 21886432 - 21886472
Alignment:
Q  184 gataccgctaataatttgagaaaatgaaagtgattaaatgt 224  Q
    ||||||| |||||||||||| |||||| |||||||||||||    
T  21886432 gataccggtaataatttgagtaaatgacagtgattaaatgt 21886472  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Original strand, 21886517 - 21886557
Alignment:
Q  184 gataccgctaataatttgagaaaatgaaagtgattaaatgt 224  Q
    ||||||| ||||||||||||||||||| ||||||| |||||    
T  21886517 gataccggtaataatttgagaaaatgatagtgattgaatgt 21886557  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Original strand, 35335609 - 35335640
Alignment:
Q  192 taataatttgagaaaatgaaagtgattaaatg 223  Q
    ||||||||||||||||||||||||||||||||    
T  35335609 taataatttgagaaaatgaaagtgattaaatg 35335640  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Complemental strand, 2401526 - 2401492
Alignment:
Q  190 gctaataatttgagaaaatgaaagtgattaaatgt 224  Q
    ||||||||||||||||||| |||||||||||||||    
T  2401526 gctaataatttgagaaaatcaaagtgattaaatgt 2401492  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 33331995 - 33331963
Alignment:
Q  192 taataatttgagaaaatgaaagtgattaaatgt 224  Q
    ||||||||||||||||| |||||||||||||||    
T  33331995 taataatttgagaaaataaaagtgattaaatgt 33331963  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Complemental strand, 27531892 - 27531860
Alignment:
Q  192 taataatttgagaaaatgaaagtgattaaatgt 224  Q
    ||||||||||| |||||||||||||||||||||    
T  27531892 taataatttgaaaaaatgaaagtgattaaatgt 27531860  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 4240973 - 4240933
Alignment:
Q  184 gataccgctaataatttgagaaaatgaaagtgattaaatgt 224  Q
    ||||||| ||||||||| |||||||||||||||| ||||||    
T  4240973 gataccgttaataatttaagaaaatgaaagtgatgaaatgt 4240933  T

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