View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_low_42 (Length: 238)
Name: NF9578_low_42
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 28692448 - 28692557
Alignment:
| Q |
1 |
gtgtataacttttagcatggagtttagaatgacaatacatcactttttgacttttttatgttcatagtatcaattaaacacatacattcaataaaataga |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28692448 |
gtgtataacttttggcatggagtttagaatgacaatacatcactttttgacttttttatgttcatagtatcaattaaacacatacattcaataaaataga |
28692547 |
T |
|
| Q |
101 |
tgattaaaat |
110 |
Q |
| |
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|||||||||| |
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| T |
28692548 |
tgattaaaat |
28692557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 28693154 - 28693261
Alignment:
| Q |
118 |
atagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaa-tctgataaactccaccagggggtgtcagagctgattcaaacatggtagtt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28693154 |
atagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaaatctgataaattccaccagggggtgtcagagctgattcaaacatggtagtt |
28693253 |
T |
|
| Q |
217 |
gcaataag |
224 |
Q |
| |
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|||||||| |
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|
| T |
28693254 |
gcaataag |
28693261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 15329948 - 15329842
Alignment:
| Q |
118 |
atagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaatctgataaactccaccagggggtgtcagagctgattcaaacatggtagttg |
217 |
Q |
| |
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|||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |
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| T |
15329948 |
atagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggactcagagttgattcgtacatggtagttg |
15329849 |
T |
|
| Q |
218 |
caataag |
224 |
Q |
| |
|
||||||| |
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|
| T |
15329848 |
caataag |
15329842 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 15510317 - 15510211
Alignment:
| Q |
118 |
atagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaatctgataaactccaccagggggtgtcagagctgattcaaacatggtagttg |
217 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||| |
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| T |
15510317 |
atagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccaccagggggactcagagttgattcgtacatggtagttg |
15510218 |
T |
|
| Q |
218 |
caataag |
224 |
Q |
| |
|
||||||| |
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| T |
15510217 |
caataag |
15510211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 28866042 - 28865936
Alignment:
| Q |
118 |
atagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaatctgataaactccaccagggggtgtcagagctgattcaaacatggtagttg |
217 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||| |||||| |||||| ||||||||||||| |
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|
| T |
28866042 |
atagtagaattggaggaagtgatgttcaaattattgtcatcagaactaatctgataaaatccaccagggggactcagagttgattcgaacatggtagttg |
28865943 |
T |
|
| Q |
218 |
caataag |
224 |
Q |
| |
|
||||||| |
|
|
| T |
28865942 |
caataag |
28865936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 14727853 - 14727747
Alignment:
| Q |
118 |
atagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaatctgataaactccaccagggggtgtcagagctgattcaaacatggtagttg |
217 |
Q |
| |
|
|||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |||||| |||||| ||||| |
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|
| T |
14727853 |
atagtagaattggaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaaactgattggtacatggcagttg |
14727754 |
T |
|
| Q |
218 |
caataag |
224 |
Q |
| |
|
||||||| |
|
|
| T |
14727753 |
caataag |
14727747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 29552884 - 29552814
Alignment:
| Q |
118 |
atagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaatctgataaactccaccaggggg |
188 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||||| |||| ||| ||||||||||||||||||||| |
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|
| T |
29552884 |
atagtagaattggaggaagtgatgttcaaatttttgtcactagcattaacctgataaactccaccaggggg |
29552814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 26090318 - 26090216
Alignment:
| Q |
118 |
atagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaatctgataaactccaccagggggtgtcagagctgattcaaacatggtagttg |
217 |
Q |
| |
|
|||||||| || |||||||||||||| ||||| |||||||| | ||||||||||||||||||||| |||| |||| ||| ||| ||||||||| || |
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| T |
26090318 |
atagtagaattgaaggaagtgatgttccaattattgtcaccaaccctaatctgataaactccaccatggggagtcaaagc----tcatacatggtagatg |
26090223 |
T |
|
| Q |
218 |
caataag |
224 |
Q |
| |
|
||||||| |
|
|
| T |
26090222 |
caataag |
26090216 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 188
Target Start/End: Complemental strand, 30648969 - 30648911
Alignment:
| Q |
130 |
gaggaagtgatgttcaaattactgtcaccagcactaatctgataaactccaccaggggg |
188 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||| |||||||| |||||||||||| |
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|
| T |
30648969 |
gaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattccaccaggggg |
30648911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 118 - 224
Target Start/End: Original strand, 26086405 - 26086511
Alignment:
| Q |
118 |
atagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaatctgataaactccaccagggggtgtcagagctgattcaaacatggtagttg |
217 |
Q |
| |
|
|||||||| || |||||||||||||||||| || ||||||| |||||| || ||||||||||||||||||| ||||||||||||||| |||||||||| | |
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|
| T |
26086405 |
atagtagaattggaggaagtgatgttcaaactattgtcaccggcactactcggataaactccaccagggggagtcagagctgattcatacatggtagtcg |
26086504 |
T |
|
| Q |
218 |
caataag |
224 |
Q |
| |
|
||||||| |
|
|
| T |
26086505 |
caataag |
26086511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 4820006 - 4819942
Alignment:
| Q |
118 |
atagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaatctgataaactccacc |
182 |
Q |
| |
|
|||||||| || | ||| |||||||||||| ||||||||| |||| ||| ||||||||||||||| |
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|
| T |
4820006 |
atagtagaattggtggacgtgatgttcaaactactgtcactagcattaacctgataaactccacc |
4819942 |
T |
|
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