View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9578_low_49 (Length: 222)
Name: NF9578_low_49
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_49 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 44004974 - 44005165
Alignment:
| Q |
16 |
tcaaaaatgacttccagaaattcacactgaactgcaaactctaaagccatgtaaagaccgtaagcttccgctactgctaggtcgatgaatccattcttgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44004974 |
tcaaaaatgacttccagaaattcacaccgaactgcaaactctaaagccatgtaaagaccgtaagcttccgctactgctaggtcgatgaatccattcttgc |
44005073 |
T |
|
| Q |
116 |
gtcaagttgctgacgctagaacctcgccattttcatcacgacaaatcgttgctaaaccccagatattatcttccgataagttagcatctgtg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44005074 |
gtcaagttgctgacgctagaacctcgccattttcatcacgacaaatcgttgttaaaccccaaatattatcttccgataagttagcatctgtg |
44005165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University