View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_low_5 (Length: 556)
Name: NF9578_low_5
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 378
Target Start/End: Complemental strand, 12671037 - 12670678
Alignment:
| Q |
17 |
aatcaccgattatgaaaatcaaaagttaaacatggatttttagctttcaatcaccacagagatgataattgaactatacctagcaattgagtaattcgct |
116 |
Q |
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| T |
12671037 |
aatcaccgattatgaaaatcaaaagttaaacatagatttttagctttcaatcaccacaaagatgataattgaactatacctagcaattgagtaattcact |
12670938 |
T |
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| Q |
117 |
cgtctttttgcttaaaacaacgattatttatttcttttcaaattaatcacacacaaataagccacacaatatgcatcgtcgactgtaatgatttagaaaa |
216 |
Q |
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| T |
12670937 |
cgtctttttgcttaaaacaacaattatttatttcttttcaaattactcacacacaaataagccacacaatatgcatcctcgaccgtaatgatttagaaaa |
12670838 |
T |
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| Q |
217 |
atcctcatagagcactaaataaaagattgtggtcaaacaaacttgagggattcactcaaaagatattgaaccattgccgcactagcatccaaaactttnn |
316 |
Q |
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| T |
12670837 |
atcctcatagagcactaaatagaagattgtggtcaaacaaacttgagggattcactcaaaagatattgaaccattgccgcactagcatccaaagcttt-- |
12670740 |
T |
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| Q |
317 |
nnnnnnnnnngtcacatactaaaatcaagtgattcaaattttcagcttcaccgcagacttca |
378 |
Q |
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| T |
12670739 |
taaaaaaaaagtcacatgctaaaatcaagtgattcaaattttcagcttcaccgcagccttca |
12670678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 401 - 541
Target Start/End: Complemental strand, 12670637 - 12670497
Alignment:
| Q |
401 |
tcatactatgttagagtattccacgttgaactagattatcctttgcagagatccggttatgaagtagcctctatgaaaaaataaataccttcaacgaaac |
500 |
Q |
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| T |
12670637 |
tcatactgtgttgaagtattccacgttgaactagattatcctttgcagagatccgattatgaagtagcctctatgaaaaaatagatacctttaacgaaac |
12670538 |
T |
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| Q |
501 |
tgttttgttacaaattattattgtaaatcatgtcgagtatt |
541 |
Q |
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| T |
12670537 |
tgttttgttataaattattattgtaaatcatgtcgagtatt |
12670497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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