View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9578_low_53 (Length: 217)
Name: NF9578_low_53
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 36743802 - 36744006
Alignment:
| Q |
3 |
gggccaaacacaccctatgtttagttaatatgtgtcgcgatgattgaaagaatagtcatgttatgtaattatttatgttgcagccataccttccacatga |
102 |
Q |
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| T |
36743802 |
gggccaaacacaccctatgtttagttaatatgtgtcgcgatgattgaaagaatagtcatgttatgtaattatttatgttgcagccataccttccacatga |
36743901 |
T |
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| Q |
103 |
aatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattat |
202 |
Q |
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| T |
36743902 |
aatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattat |
36744001 |
T |
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| Q |
203 |
gatgt |
207 |
Q |
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||||| |
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| T |
36744002 |
gatgt |
36744006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 8e-20; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 123 - 208
Target Start/End: Complemental strand, 6392194 - 6392109
Alignment:
| Q |
123 |
actacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtc |
208 |
Q |
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| T |
6392194 |
actacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtc |
6392109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 6364607 - 6364486
Alignment:
| Q |
87 |
cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga |
186 |
Q |
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| T |
6364607 |
cataccttccaagtgaaacaccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatggga |
6364508 |
T |
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| Q |
187 |
cagaatctatgattatgatgtc |
208 |
Q |
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| T |
6364507 |
aagaatatatgattatgatgtc |
6364486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 7460806 - 7460685
Alignment:
| Q |
87 |
cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga |
186 |
Q |
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||||||||||| || || ||||||||| |||| |||||||||| | ||||||| | |||||||| ||||||||||| | | |||| |||||||||| |
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| T |
7460806 |
cataccttccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatggga |
7460707 |
T |
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| Q |
187 |
cagaatctatgattatgatgtc |
208 |
Q |
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|||||| ||||||||||||||| |
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| T |
7460706 |
cagaatatatgattatgatgtc |
7460685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 6290642 - 6290521
Alignment:
| Q |
87 |
cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga |
186 |
Q |
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||||||||||| ||||| ||||||||| |||| |||| ||||| | ||||||| | |||||||| ||||||||||||| | |||| |||||||||| |
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| T |
6290642 |
cataccttccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatggga |
6290543 |
T |
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| Q |
187 |
cagaatctatgattatgatgtc |
208 |
Q |
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||||| |||||||| |||||| |
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| T |
6290542 |
aagaatatatgattacgatgtc |
6290521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 208
Target Start/End: Complemental strand, 6353734 - 6353613
Alignment:
| Q |
87 |
cataccttccacatgaaatgccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatggga |
186 |
Q |
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||||||||||| ||||| || |||||| |||| |||||||||| | ||||||| | |||||||| ||||||||||| | | |||| |||||||||| |
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| T |
6353734 |
cataccttccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatggga |
6353635 |
T |
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| Q |
187 |
cagaatctatgattatgatgtc |
208 |
Q |
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||||| |||||||| |||||| |
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| T |
6353634 |
aagaatatatgattacgatgtc |
6353613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 6411345 - 6411273
Alignment:
| Q |
136 |
agaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtc |
208 |
Q |
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||||||| | |||||||| ||||||||||| | | ||||| ||| |||||||||||| ||||||||||||||| |
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| T |
6411345 |
agaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtc |
6411273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 42694465 - 42694405
Alignment:
| Q |
148 |
tttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtc |
208 |
Q |
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|||||| ||||||||||||| | | || | |||||||| ||||||||||||||||||||| |
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| T |
42694465 |
tttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtc |
42694405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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