View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9578_low_57 (Length: 208)
Name: NF9578_low_57
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9578_low_57 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 87 - 188
Target Start/End: Complemental strand, 107005 - 106904
Alignment:
| Q |
87 |
agtgtttgtgttataaagatcaaaagagaagagaatgaattacttgggtcgcgagcggtggctttaacagtgtaaccacgatggagaaggtaacgaacga |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
107005 |
agtgtttgtgttataaagatcaaaagagaagagaatgaattacttgggtcgcgaacggtggctttaacagtgtaaccacgatggagaaggtaacgaacga |
106906 |
T |
|
| Q |
187 |
gc |
188 |
Q |
| |
|
|| |
|
|
| T |
106905 |
gc |
106904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 107128 - 107051
Alignment:
| Q |
14 |
catagggtcaaaacttatgaagcacggacgtagacgcagacacattaactttaaacaatgacttaattaattcagtgt |
91 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||||| || ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
107128 |
catagggtcaaaacgtatgaagcacgaacatagacacatacacattaactttaaacaatgacttaattaattaagtgt |
107051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 87595 - 87547
Alignment:
| Q |
127 |
tacttgggtcgcgagcggtggctttaacagtgtaaccacgatggagaag |
175 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
87595 |
tacttggatcgcgaacggtggctttaacagtgtagccacgatgaagaag |
87547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University