View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9578_low_9 (Length: 434)

Name: NF9578_low_9
Description: NF9578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9578_low_9
NF9578_low_9
[»] chr2 (14 HSPs)
chr2 (299-378)||(41702128-41702207)
chr2 (299-378)||(30602345-30602424)
chr2 (304-377)||(27494172-27494245)
chr2 (316-378)||(3208416-3208478)
chr2 (309-378)||(9685587-9685656)
chr2 (316-377)||(13413224-13413285)
chr2 (304-376)||(20143119-20143191)
chr2 (316-378)||(4413238-4413300)
chr2 (304-378)||(28224861-28224935)
chr2 (304-348)||(2626049-2626093)
chr2 (316-375)||(42122690-42122749)
chr2 (299-353)||(10587152-10587206)
chr2 (316-378)||(18745126-18745188)
chr2 (304-378)||(19161955-19162029)
[»] chr8 (6 HSPs)
chr8 (299-378)||(38815150-38815229)
chr8 (316-378)||(18596771-18596833)
chr8 (316-378)||(18804486-18804548)
chr8 (316-378)||(22589508-22589570)
chr8 (304-376)||(44337201-44337272)
chr8 (309-378)||(24350894-24350963)
[»] chr4 (18 HSPs)
chr4 (316-378)||(40392726-40392788)
chr4 (304-378)||(3329857-3329931)
chr4 (305-377)||(12053329-12053401)
chr4 (299-378)||(26521345-26521424)
chr4 (313-372)||(50464474-50464533)
chr4 (304-378)||(50001098-50001172)
chr4 (306-378)||(39001260-39001332)
chr4 (304-378)||(23255574-23255648)
chr4 (316-378)||(30940904-30940966)
chr4 (304-378)||(31846964-31847038)
chr4 (304-377)||(53619447-53619520)
chr4 (303-378)||(23604950-23605025)
chr4 (323-378)||(50463115-50463170)
chr4 (304-378)||(4419125-4419198)
chr4 (304-378)||(55933632-55933706)
chr4 (317-378)||(50442651-50442712)
chr4 (309-341)||(8125449-8125481)
chr4 (316-378)||(600864-600926)
[»] chr3 (13 HSPs)
chr3 (299-378)||(39583401-39583480)
chr3 (304-378)||(26772619-26772693)
chr3 (316-378)||(32546668-32546730)
chr3 (299-378)||(8591997-8592076)
chr3 (316-378)||(44706-44768)
chr3 (320-378)||(26856934-26856992)
chr3 (304-378)||(38671052-38671126)
chr3 (316-378)||(53785582-53785644)
chr3 (316-370)||(4763972-4764026)
chr3 (316-378)||(37133171-37133233)
chr3 (316-377)||(44198640-44198701)
chr3 (316-345)||(49017840-49017869)
chr3 (303-343)||(4472922-4472962)
[»] chr7 (14 HSPs)
chr7 (304-378)||(45003069-45003143)
chr7 (316-378)||(45614014-45614076)
chr7 (304-377)||(38766185-38766258)
chr7 (304-366)||(38832163-38832225)
chr7 (304-377)||(19277152-19277225)
chr7 (303-354)||(2520917-2520968)
chr7 (316-378)||(21327010-21327072)
chr7 (304-353)||(36931899-36931948)
chr7 (316-372)||(45974777-45974833)
chr7 (303-377)||(9281309-9281383)
chr7 (303-377)||(9292280-9292354)
chr7 (316-378)||(25187103-25187165)
chr7 (304-378)||(28517459-28517533)
chr7 (305-346)||(40726684-40726725)
[»] chr6 (10 HSPs)
chr6 (304-378)||(17249477-17249551)
chr6 (304-377)||(33220884-33220957)
chr6 (303-378)||(34168781-34168856)
chr6 (304-378)||(7749342-7749416)
chr6 (309-377)||(28009160-28009228)
chr6 (303-357)||(947961-948015)
chr6 (299-333)||(27903854-27903888)
chr6 (304-378)||(28543258-28543332)
chr6 (309-378)||(3137419-3137488)
chr6 (316-344)||(749534-749562)
[»] chr1 (16 HSPs)
chr1 (316-378)||(868573-868635)
chr1 (304-378)||(5453956-5454030)
chr1 (316-378)||(22346768-22346830)
chr1 (303-378)||(30688417-30688492)
chr1 (316-378)||(19035352-19035414)
chr1 (316-378)||(7213116-7213178)
chr1 (316-378)||(1114040-1114102)
chr1 (304-378)||(2898563-2898637)
chr1 (316-378)||(24177683-24177745)
chr1 (316-378)||(28493503-28493565)
chr1 (316-378)||(31737494-31737556)
chr1 (318-378)||(28041299-28041359)
chr1 (304-347)||(6670308-6670351)
chr1 (316-375)||(21472876-21472935)
chr1 (316-378)||(20259969-20260031)
chr1 (304-372)||(6790841-6790909)
[»] scaffold0009 (1 HSPs)
scaffold0009 (316-378)||(102979-103041)
[»] scaffold0406 (1 HSPs)
scaffold0406 (316-377)||(6761-6822)
[»] chr5 (7 HSPs)
chr5 (322-378)||(11005757-11005813)
chr5 (304-377)||(35310309-35310382)
chr5 (304-376)||(33692226-33692298)
chr5 (316-378)||(42921571-42921633)
chr5 (304-372)||(2917539-2917607)
chr5 (320-378)||(8100431-8100489)
chr5 (304-378)||(27336556-27336630)
[»] scaffold0309 (1 HSPs)
scaffold0309 (316-371)||(5197-5252)


Alignment Details
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 41702128 - 41702207
Alignment:
Q  299 caaggattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||||||||||| |||||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||||    
T  41702128 caaggattacttacacatgaatagaaggcaagtgggcaacaagctgcgccactaggcctttttggatggcaaaaccaatc 41702207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 30602345 - 30602424
Alignment:
Q  299 caaggattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||||| ||||| |||||||||||||| |||| |||||||||||||  |||||||| ||||||||||||||||||||    
T  30602345 caaggattaattacacatgaatagaaggcatgcgggcaacaagctgcgctgctaggcctttttggatggcaaaaccaatc 30602424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 27494172 - 27494245
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    ||||||||||||||||||| |||||||| | ||||||||||||||  ||| ||| |||||||||||||||||||    
T  27494172 attacttacatatgaataggaggcaagcaggcaacaagctgcgccgttagacctttttggatggcaaaaccaat 27494245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 3208478 - 3208416
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||||| |||||||||||||| |||  ||| ||||||||||||||||||||    
T  3208478 tgaatagaaggcaagcgggcaacaagctgcgccgctaaacctttttggatggcaaaaccaatc 3208416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 9685656 - 9685587
Alignment:
Q  309 ttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||| |||||| ||||||||||| |||||||||||||| |||| ||| |||||||||||||| |||||    
T  9685656 ttacatttgaatataaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaacaatc 9685587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 13413224 - 13413285
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    |||||||||| |||||||||||||||||| |||  ||||||| |||||||||||||||||||    
T  13413224 tgaatagaagacaagcggacaacaagctgagccgttaggcctttttggatggcaaaaccaat 13413285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 20143191 - 20143119
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaa 376  Q
    |||| |||||| |||||||||||||| | ||||||||| |||||| |||| ||| ||||||||||||||||||    
T  20143191 attatttacatttgaatagaaggcaaacagacaacaagttgcgccgctagacctttttggatggcaaaaccaa 20143119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 4413300 - 4413238
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||||||||||| || |||||||||||||| |||| ||| |||||||||||||| |||||    
T  4413300 tgaatagaaggcaagtgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatc 4413238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 28224861 - 28224935
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| |||||||| || ||||||| ||| |||||||||| |||| ||| ||||||||||||||| ||||    
T  28224861 attacttacaaatgaataggagacaagcgggcaataagctgcgccgctagacctttttggatggcaaaacaaatc 28224935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 2626093 - 2626049
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcc 348  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  2626093 attaattacacatgaatagaaggcaagcggacaacaagctgcgcc 2626049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 42122690 - 42122749
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaacca 375  Q
    ||||||||||||||||| |||| |||||||||| |||| | | |||||||||||||||||    
T  42122690 tgaatagaaggcaagcgaacaataagctgcgccgctagacttttttggatggcaaaacca 42122749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 299 - 353
Target Start/End: Complemental strand, 10587206 - 10587152
Alignment:
Q  299 caaggattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctag 353  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||||| |||| ||||    
T  10587206 caaggattacttacacatgaatagaaggcaaacgggcaacaagctacgccgctag 10587152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 18745188 - 18745126
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| ||||||  ||| |||||||||| |||| ||| ||||||||||||||||||||    
T  18745188 tgaatagaagacaagcgagcaataagctgcgccgctagacctttttggatggcaaaaccaatc 18745126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 19162029 - 19161955
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||| |||||| ||||||||| ||||||||||| ||||||||||| ||| | || |||||||| ||||| |||||    
T  19162029 attatttacatttgaatagaaagcaagcggacagcaagctgcgccactacgtctttttggatgacaaaatcaatc 19161955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 38815150 - 38815229
Alignment:
Q  299 caaggattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||| ||| |||| ||||||||| ||||||||||    
T  38815150 caaggattgcttacacatgaatagaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggaaaaaccaatc 38815229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 18596833 - 18596771
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||| |||||||||||||||| |||| ||| || |||||||||||||||||    
T  18596833 tgaatagaaggcaagctgacaacaagctgcgccgctagaccttttcggatggcaaaaccaatc 18596771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 18804486 - 18804548
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||| | |||||||||||||| |||| ||| ||||||||||||||||||||    
T  18804486 tgaatagaaggcaagcaggcaacaagctgcgccgctagacctttttggatggcaaaaccaatc 18804548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 22589570 - 22589508
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||| ||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||    
T  22589570 tgaataaaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatc 22589508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 376
Target Start/End: Original strand, 44337201 - 44337272
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaa 376  Q
    |||||||||| |||||||| |||||||||  |||||||||| ||| || | ||| ||||||||||||||||||    
T  44337201 attacttacacatgaataggaggcaagcgagcaacaagctg-gccgctggacctttttggatggcaaaaccaa 44337272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 24350963 - 24350894
Alignment:
Q  309 ttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||| |||||||||||  |||||| ||||| |||| ||| |||||| | |||||| |||||||||||||    
T  24350963 ttacacatgaatagaagataagcgggcaacaggctgggccactaggcttttttggagggcaaaaccaatc 24350894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 40392788 - 40392726
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  40392788 tgaatagaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaaccaatc 40392726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 3329857 - 3329931
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||||||  ||||||| |||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||    
T  3329857 attacttacacgtgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatc 3329931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 12053329 - 12053401
Alignment:
Q  305 ttacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    ||||||||| ||||||||||||||||| |||||||||||||| | || ||||| ||| |||||||||||||||    
T  12053329 ttacttacacatgaatagaaggcaagcagacaacaagctgcgtcgctcggcctttttcgatggcaaaaccaat 12053401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 26521345 - 26521424
Alignment:
Q  299 caaggattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||||||||||| ||| ||||||||||||||||||| |||||| ||| |||  ||| |||||||| |||||||||||    
T  26521345 caaggattacttacacatggatagaaggcaagcggacaaaaagctgtgccgctaaacctttttggatgacaaaaccaatc 26521424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 50464533 - 50464474
Alignment:
Q  313 atatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaa 372  Q
    |||| ||||||||||||||||||||||||||||||| ||||| || ||||||||||||||    
T  50464533 atataaatagaaggcaagcggacaacaagctgcgccgctaggtctttttggatggcaaaa 50464474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 50001172 - 50001098
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| |||||||| |||||||||| |||||||||||||| ||||  || |||||||||||||| |||||    
T  50001172 attacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagatctttttggatggcaaaatcaatc 50001098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 306 - 378
Target Start/End: Original strand, 39001260 - 39001332
Alignment:
Q  306 tacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||| |||||||| |||||||||| |||||| ||||||| |||| ||| |||||||| |||||||||||    
T  39001260 tacttacacatgaataggaggcaagcgggcaacaaactgcgccgctagacctttttggatgacaaaaccaatc 39001332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 23255574 - 23255648
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||| |||||||||||| ||| ||||||||||||||||||||| |||| | | | |||||||||||| |||||    
T  23255574 attactcacatatgaataggaggtaagcggacaacaagctgcgccgctagacttttctggatggcaaaatcaatc 23255648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 30940966 - 30940904
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||||| |||||||||||| | |||| ||| |||||||||||||| |||||    
T  30940966 tgaatagaaggcaagcgggcaacaagctgcgtcgctagacctttttggatggcaaaatcaatc 30940904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 31846964 - 31847038
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| |||||||| |||||||||| |||||| ||||||| |||| ||| ||||||||||| ||| ||||    
T  31846964 attacttacacatgaataggaggcaagcgggcaacaacctgcgccgctagacctttttggatggcataacgaatc 31847038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 53619447 - 53619520
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    |||||||||| |||||||| ||| |||  | |||||||||||||| |||| ||| |||||||||||||||||||    
T  53619447 attacttacacatgaataggaggtaagtaggcaacaagctgcgccgctagacctttttggatggcaaaaccaat 53619520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 23604950 - 23605025
Alignment:
Q  303 gattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||| ||||| ||||||||||| ||| ||||||||||| |||||| |||| ||| |||||||| ||||| |||||    
T  23604950 gattatttacacatgaatagaagacaaccggacaacaagttgcgccgctagacctttttggatgacaaaatcaatc 23605025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 378
Target Start/End: Complemental strand, 50463170 - 50463115
Alignment:
Q  323 aaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||| ||||||||||| ||||| || ||||||||||||||| ||||    
T  50463170 aaggcaagcggacagcaagctgcgccgctaggtctttttggatggcaaaacaaatc 50463115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 4419125 - 4419198
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||| || |||||||| |||||||||| |||||||||||||| ||| |  | ||||||||||||||||||||    
T  4419125 attacttgcacatgaataggaggcaagcgggcaacaagctgcgccgcta-gattttttggatggcaaaaccaatc 4419198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 55933706 - 55933632
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||| || |||||||| ||||||||||||||||| ||||| | |||| | | |||||||||||||| |||||    
T  55933706 attacttgcacatgaataggaggcaagcggacaacaaactgcgtcgctagacttttttggatggcaaaatcaatc 55933632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 378
Target Start/End: Complemental strand, 50442712 - 50442651
Alignment:
Q  317 gaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||| |||| ||||||| |||||||||||||| |||  ||| ||||||||||||||||||||    
T  50442712 gaatggaagacaagcgggcaacaagctgcgccactaaccctttttggatggcaaaaccaatc 50442651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 8125449 - 8125481
Alignment:
Q  309 ttacatatgaatagaaggcaagcggacaacaag 341  Q
    |||||||||||||||||||||||||||||||||    
T  8125449 ttacatatgaatagaaggcaagcggacaacaag 8125481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 600926 - 600864
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||||||||||||||| || | |||  | | ||||||||||||||| ||||    
T  600926 tgaatagaaggcaagcggacaacaagctacgtcgctatacatttttggatggcaaaactaatc 600864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 299 - 378
Target Start/End: Complemental strand, 39583480 - 39583401
Alignment:
Q  299 caaggattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||||||||||| |||||||||| |||||| ||||||||| |||||| |||| ||| |||||||||||||| |||||    
T  39583480 caaggattacttacacatgaatagaaagcaagcagacaacaagttgcgccgctagacctttttggatggcaaaatcaatc 39583401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 26772619 - 26772693
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| |||||||| |||||||||| |||||||||||||| |||| ||| |||||||||||||| |||||    
T  26772619 attacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaatcaatc 26772693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 32546668 - 32546730
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||    
T  32546668 tgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatc 32546730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 299 - 378
Target Start/End: Original strand, 8591997 - 8592076
Alignment:
Q  299 caaggattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||| |||||||||| ||||||| |||||||| ||  ||||||||||||| || ||||| |||||||||||||| |||||    
T  8591997 caagaattacttacacatgaatataaggcaagtgggtaacaagctgcgccgctgggcctttttggatggcaaaatcaatc 8592076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 44706 - 44768
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||||| |||||| ||||||| |||| ||| ||||||||||||||| ||||    
T  44706 tgaatagaaggcaagcgggcaacaaactgcgccgctagacctttttggatggcaaaacaaatc 44768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 378
Target Start/End: Complemental strand, 26856992 - 26856934
Alignment:
Q  320 tagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||  |||||||||||||| |||||||| ||||||||| ||||||||||    
T  26856992 tagaaggcaagcgagcaacaagctgcgccgctaggcctttttggatggtaaaaccaatc 26856934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 38671126 - 38671052
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||| ||||| || ||||| ||| ||||||||||||||||||||| |||| | | ||| ||||||||||||||||    
T  38671126 attatttacacataaataggaggtaagcggacaacaagctgcgccgctagacttttttagatggcaaaaccaatc 38671052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 53785582 - 53785644
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||||| ||||||||| |||| || | |||  |||||||||||||||||||    
T  53785582 tgaatagaaggcaagcgggcaacaagctacgccgctggaccttgttggatggcaaaaccaatc 53785644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 4764026 - 4763972
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaa 370  Q
    |||||||||||||||||| ||||||| |||||| | | |||| ||||||||||||    
T  4764026 tgaatagaaggcaagcgggcaacaagttgcgccaccaagcctttttggatggcaa 4763972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 37133233 - 37133171
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| |||  ||||||||| ||||||| |||| ||| ||||||| ||||||||||||    
T  37133233 tgaatagaagacaatgggacaacaaactgcgccgctagacctttttggatcgcaaaaccaatc 37133171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 44198640 - 44198701
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    ||||||||||||||||||||||||||||| | | ||   ||| |||||||||||||| ||||    
T  44198640 tgaatagaaggcaagcggacaacaagctgtgtcgctcaacctttttggatggcaaaatcaat 44198701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 345
Target Start/End: Original strand, 49017840 - 49017869
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgc 345  Q
    ||||||||||||||||||||||||||||||    
T  49017840 tgaatagaaggcaagcggacaacaagctgc 49017869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 4472922 - 4472962
Alignment:
Q  303 gattacttacatatgaatagaaggcaagcggacaacaagct 343  Q
    ||||||||||| ||||||||||| |||||||| ||||||||    
T  4472922 gattacttacacatgaatagaagacaagcggataacaagct 4472962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 45003143 - 45003069
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| |||||||| |||||||||||||| |||||||||| |||| ||| |||||||||||||| |||||    
T  45003143 attacttacacatgaataggaggcaagcggacaataagctgcgccgctagacctttttggatggcaaaatcaatc 45003069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 45614076 - 45614014
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||||||||||||||||||||||||||||| |||| ||| || |||||||||||||||||    
T  45614076 tgaatagaaggcaagcggacaacaagctgcgccgctagaccttttcggatggcaaaaccaatc 45614014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 38766185 - 38766258
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    |||||||||| |||||||| |||||||||| |||||||||||||  |||| ||| |||||||||||||||||||    
T  38766185 attacttacacatgaataggaggcaagcgggcaacaagctgcgcagctagacctttttggatggcaaaaccaat 38766258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 38832163 - 38832225
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatg 366  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| |||| ||| ||||||||    
T  38832163 attacttacatatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatg 38832225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 19277152 - 19277225
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    |||| |||||| ||||||||||||| |||| ||| |||||||||| |||| ||| |||||||||||||||||||    
T  19277152 attatttacatttgaatagaaggcaggcgggcaataagctgcgccgctagacctttttggatggcaaaaccaat 19277225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 2520968 - 2520917
Alignment:
Q  303 gattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctagg 354  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||| |||||    
T  2520968 gattaattacacatgaatagaaggcaagcggacaacaagctgcgccgctagg 2520917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 21327072 - 21327010
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||| ||||||||||||||||  ||| ||| |||||||||||||| |||||    
T  21327072 tgaatagaaggcaagcagacaacaagctgcgccgttagacctttttggatggcaaaatcaatc 21327010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 36931948 - 36931899
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctag 353  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| ||||    
T  36931948 attacttacatatgaataggaggcaagcggataacaagctgcgccgctag 36931899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 45974833 - 45974777
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaa 372  Q
    |||||||||| |||||||||||||||||||||| |||| ||| |||||||| |||||    
T  45974833 tgaatagaagacaagcggacaacaagctgcgccactagacctttttggatgacaaaa 45974777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 9281383 - 9281309
Alignment:
Q  303 gattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    ||||| ||||||||||||| |||| |||| |||||||| |||| ||  || |||| ||||||| |||||||||||    
T  9281383 gattaattacatatgaatataaggtaagcagacaacaaactgcaccgttaagcctttttggattgcaaaaccaat 9281309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 9292354 - 9292280
Alignment:
Q  303 gattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    ||||| ||||||||||||| |||| |||| |||||||| |||| ||  || |||| ||||||| |||||||||||    
T  9292354 gattaattacatatgaatataaggtaagcagacaacaaactgcaccgttaagcctttttggattgcaaaaccaat 9292280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 25187165 - 25187103
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||||| |||||||||||||| ||||  || ||| ||||| |||| |||||    
T  25187165 tgaatagaaggcaagcgggcaacaagctgcgccgctagatctttttagatggtaaaatcaatc 25187103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 28517533 - 28517459
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| |||||||| |||||  ||| |||||||||| | | |||| | | ||||||||||||||||||||    
T  28517533 attacttacacatgaataggaggcagacgggcaacaagctgtgtcgctagacttttttggatggcaaaaccaatc 28517459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 40726725 - 40726684
Alignment:
Q  305 ttacttacatatgaatagaaggcaagcggacaacaagctgcg 346  Q
    ||||||||| |||||||| |||||||||| ||||||||||||    
T  40726725 ttacttacacatgaataggaggcaagcgggcaacaagctgcg 40726684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 378
Target Start/End: Complemental strand, 17249551 - 17249477
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||| | |||||||| |||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||    
T  17249551 attacttatacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatc 17249477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 33220957 - 33220884
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    |||||||||| |||||||| |||||||||| |||||||||||||| |||| ||| || ||||||||||||||||    
T  33220957 attacttacacatgaataggaggcaagcggccaacaagctgcgccgctagaccttttaggatggcaaaaccaat 33220884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 34168781 - 34168856
Alignment:
Q  303 gattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||| ||||| ||||||||||||||||||| | ||||| |||||| |||||||| ||||||| ||||||||||||    
T  34168781 gattaattacacatgaatagaaggcaagcgggcgacaagttgcgccgctaggcctttttggatagcaaaaccaatc 34168856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 7749342 - 7749416
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||| ||||| |||||||| |||||||||| ||||||||||| || |||| ||| || |||||||||||||||||    
T  7749342 attagttacacatgaataggaggcaagcgggcaacaagctgcaccgctagaccttttaggatggcaaaaccaatc 7749416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 377
Target Start/End: Complemental strand, 28009228 - 28009160
Alignment:
Q  309 ttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    ||||| ||||||||||||||| ||||||| |||||||| |  ||||||| ||||||| |||||| ||||    
T  28009228 ttacacatgaatagaaggcaaacggacaataagctgcgtcgttaggcctttttggattgcaaaatcaat 28009160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 357
Target Start/End: Original strand, 947961 - 948015
Alignment:
Q  303 gattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcct 357  Q
    ||||| ||||| ||||||| ||||||||||| | |||||||||||| ||||||||    
T  947961 gattaattacacatgaatataaggcaagcggtctacaagctgcgccgctaggcct 948015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 299 - 333
Target Start/End: Complemental strand, 27903888 - 27903854
Alignment:
Q  299 caaggattacttacatatgaatagaaggcaagcgg 333  Q
    |||| ||||||||||||||||||||||||||||||    
T  27903888 caagaattacttacatatgaatagaaggcaagcgg 27903854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 28543258 - 28543332
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||  |||||||||||||||||||||||  || |||||| ||||  || ||  ||||||||||||||||    
T  28543258 attacttacgcatgaatagaaggcaagcggacaattagttgcgccgctagatcttttcagatggcaaaaccaatc 28543332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 3137488 - 3137419
Alignment:
Q  309 ttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||| |||||| |||||||| ||| ||||||| ||| |  ||| |||| ||||||||||||||||||||    
T  3137488 ttacacatgaatggaaggcaaacgggcaacaagttgcactgctaagcctttttggatggcaaaaccaatc 3137419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 344
Target Start/End: Complemental strand, 749562 - 749534
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctg 344  Q
    |||||||||||||||||||||||||||||    
T  749562 tgaatagaaggcaagcggacaacaagctg 749534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 868635 - 868573
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||    
T  868635 tgaatagaaggcaagcgggcaacaagctgcgccgctagacctttttggatggcaaaaccaatc 868573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 5453956 - 5454030
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| |||||||| |||||||||| |||||||||||||| |||| ||| |||||||| |||||||||||    
T  5453956 attacttacacatgaataggaggcaagcgggcaacaagctgcgccgctagacctttttggatgacaaaaccaatc 5454030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 22346768 - 22346830
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||    
T  22346768 tgaatagaaggcaagcggacaacaagctgcgccgctagacctttttggatggcaaaactaatc 22346830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 303 - 378
Target Start/End: Original strand, 30688417 - 30688492
Alignment:
Q  303 gattacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||| ||||| ||||||||| ||||||||| |||||||||||||| |||||||| |||||||  |||||||||||    
T  30688417 gattaattacacatgaatagatggcaagcgggcaacaagctgcgccgctaggcctttttggataacaaaaccaatc 30688492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 19035352 - 19035414
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||| |||||||||||||||||| |||| ||| |||||||| |||||||||||    
T  19035352 tgaatagaaggcaatcggacaacaagctgcgccgctagacctttttggatgacaaaaccaatc 19035414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 7213116 - 7213178
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||||| ||||||| |||||| |||| ||| ||||||||| ||||||||||    
T  7213116 tgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggtaaaaccaatc 7213178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 1114102 - 1114040
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| ||||||| |||||||||| |||  ||| ||| ||||||||||||||||||||    
T  1114102 tgaatagaagccaagcgggcaacaagctgtgccgttagacctttttggatggcaaaaccaatc 1114040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 2898563 - 2898637
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||| |||||| |||||||||| |||| ||| |||||||| |||| ||| |||| |||||||||||||| |||||    
T  2898563 attatttacatttgaatagaagacaagtggataacaagctacgccgctaagcctttttggatggcaaaatcaatc 2898637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 24177745 - 24177683
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| ||||||| ||||||||||| || |||| ||| ||||| ||||||||||||||    
T  24177745 tgaatagaagacaagcgggcaacaagctgcaccgctagacctttttggttggcaaaaccaatc 24177683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 28493565 - 28493503
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| ||| |||||||||| ||||||| |||| ||| |||||||||||||| |||||    
T  28493565 tgaatagaagacaaacggacaacaaactgcgccgctagacctttttggatggcaaaatcaatc 28493503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 31737556 - 31737494
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||| | |||||||||||||||| | | |||| |||||||||||||| |||||    
T  31737556 tgaatagaaggcaaacagacaacaagctgcgccgccaagcctttttggatggcaaaatcaatc 31737494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 378
Target Start/End: Complemental strand, 28041359 - 28041299
Alignment:
Q  318 aatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||| ||||||||||||||||| |||| |||| ||| ||||||||| |||| |||||    
T  28041359 aatagaagacaagcggacaacaagctccgccgctagacctttttggatggaaaaatcaatc 28041299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 347
Target Start/End: Complemental strand, 6670351 - 6670308
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgc 347  Q
    ||||||||||||| ||||||||||||| |||||||||| |||||    
T  6670351 attacttacatataaatagaaggcaagtggacaacaaggtgcgc 6670308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 21472876 - 21472935
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaacca 375  Q
    ||||||||| |||||||| ||| ||| |||||| |||| ||| |||||||||||||||||    
T  21472876 tgaatagaatgcaagcgggcaataagttgcgccgctagacctttttggatggcaaaacca 21472935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 378
Target Start/End: Complemental strand, 20260031 - 20259969
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| |||  || |||||| ||||||| |||| ||| ||||||||||||||||||||    
T  20260031 tgaatagaagacaatggggcaacaaactgcgccgctagacctttttggatggcaaaaccaatc 20259969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 6790909 - 6790841
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaa 372  Q
    |||||||||| |||||||||||||| ||||  ||||| ||| ||| ||||| || |||||||| |||||    
T  6790909 attacttacacatgaatagaaggcaggcgggtaacaaactgtgccgctaggtctttttggatgacaaaa 6790841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 102979 - 103041
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||||||||| ||||||| |||||| |||| ||| ||||||||||||||||||||    
T  102979 tgaatagaaggcaagcgggcaacaagttgcgccgctagacctttttggatggcaaaaccaatc 103041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 6761 - 6822
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    |||||||||||||||||| |||||||||||| | |||| ||| |||||||||||||||||||    
T  6761 tgaatagaaggcaagcgggcaacaagctgcggcgctagacctttttggatggcaaaaccaat 6822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 11005757 - 11005813
Alignment:
Q  322 gaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||||    
T  11005757 gaaggcaagcgggcaacaagctgcgccgctaagcctttttggatggcaaaaccaatc 11005813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 35310309 - 35310382
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaat 377  Q
    |||||||||| |||||||| |||||||||| |||||||||||| |  ||  ||| |||||||||||||||||||    
T  35310309 attacttacacatgaataggaggcaagcgggcaacaagctgcgtcgttaaacctctttggatggcaaaaccaat 35310382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 376
Target Start/End: Complemental strand, 33692298 - 33692226
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaa 376  Q
    |||||||||| |||||||| |||||||| | |||||||||||||| ||||  || ||||||||| ||||||||    
T  33692298 attacttacacatgaataggaggcaagcaggcaacaagctgcgccgctagatctttttggatggaaaaaccaa 33692226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 42921571 - 42921633
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||||||||||||| ||  ||||||||||||| ||||  || ||||||||||||||||||||    
T  42921571 tgaatagaaggcaagtgggaaacaagctgcgccgctagatctttttggatggcaaaaccaatc 42921633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 2917607 - 2917539
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaa 372  Q
    ||||| |||| |||||||| |||||||| | |||||| ||||||| |||| ||| ||||||||||||||    
T  2917607 attacctacacatgaataggaggcaagcaggcaacaaactgcgccgctagacctttttggatggcaaaa 2917539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 320 - 378
Target Start/End: Original strand, 8100431 - 8100489
Alignment:
Q  320 tagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    ||||| ||||||  ||||||||||||||| |||||| | |||||||||||||| |||||    
T  8100431 tagaaagcaagctcacaacaagctgcgccactaggcttttttggatggcaaaatcaatc 8100489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 378
Target Start/End: Original strand, 27336556 - 27336630
Alignment:
Q  304 attacttacatatgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaaaccaatc 378  Q
    |||||||||| |||||||| || ||||||||||| || |||| || |||| ||| ||| |||||||||| |||||    
T  27336556 attacttacacatgaataggagacaagcggacaataaactgcaccgctagaccttttttgatggcaaaatcaatc 27336630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 5197 - 5252
Alignment:
Q  316 tgaatagaaggcaagcggacaacaagctgcgcctctaggcctatttggatggcaaa 371  Q
    ||||||||| |||||||| |||||||||||||| |||| ||| |||||||||||||    
T  5197 tgaatagaatgcaagcgggcaacaagctgcgccgctagacctttttggatggcaaa 5252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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