View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9579_low_1 (Length: 491)
Name: NF9579_low_1
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9579_low_1 |
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| [»] scaffold0596 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 249
Target Start/End: Complemental strand, 2517035 - 2516808
Alignment:
| Q |
22 |
acgcggatgcatcgaagagttgtgtgttttgtgggaggatggaggaaacggctctacaccnnnnnnngcattgtgaagtggtggcgaaggtgtgtcaaaa |
121 |
Q |
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| T |
2517035 |
acgcggatgcatcgaagagttgtgtgttttgtgggaggatggaggaaacaattctacacctttttttgcattgtgaagtggtggcgaaggtgtggcaaaa |
2516936 |
T |
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| Q |
122 |
gataatgaggtggcttcaattaaaattaacaacaccacataatctattggttccctttctatgttggacaaattaggcgaggaataagaagactaagaat |
221 |
Q |
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| T |
2516935 |
gataatgaggtggcttcaattaaaagtaacaacaccacataatctattggttccctttctatgttggacaaatgaggcgaggaataagaagactaaaaat |
2516836 |
T |
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| Q |
222 |
ggttttcggttgatttggaatgcttcaa |
249 |
Q |
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| T |
2516835 |
ggttttcggttgatttggaatgcttcaa |
2516808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 344
Target Start/End: Original strand, 13854432 - 13854474
Alignment:
| Q |
302 |
cgaggtagatgatttggtggagaatattaaagttctttcgtgg |
344 |
Q |
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| T |
13854432 |
cgaggtagatgatttggtggagaagattaaagttttgtcgtgg |
13854474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 403
Target Start/End: Original strand, 28800888 - 28801040
Alignment:
| Q |
251 |
ttgggctatatggaagcgaaggaatgacattgtatttaataatggtgtggccgaggtagatgatttggtggagaatattaaagttctttcgtggtattgg |
350 |
Q |
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| T |
28800888 |
ttgggttatttggaagagacggaatgaggttatcttttataatggtgtggttgaggtagaggatttggtggagaatatcaaggttctagcttggtattgg |
28800987 |
T |
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| Q |
351 |
agtatgagttgattgaaaatagcatcgtgttggtattacaagtggtgttggaa |
403 |
Q |
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| T |
28800988 |
agtatgagcaaacttaaaatagcatcatgttcgtattatgattggtgttggaa |
28801040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 359
Target Start/End: Original strand, 21019035 - 21019166
Alignment:
| Q |
228 |
cggttgatttggaatgcttcaacttgggctatat-ggaagcgaaggaatgacattgtatttaataatggtgtggccgaggtagatgatttggtggagaat |
326 |
Q |
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| T |
21019035 |
cggttgatttggaatgcgacggtttgggctattttggaagagaaggaatgatattgtgttcaata-tggtgttgtcgacttagatgatttggtggaaaat |
21019133 |
T |
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| Q |
327 |
attaaagttctttcgtggtattggagtatgagt |
359 |
Q |
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| T |
21019134 |
attaaagttctatcatggtattggagtttgagt |
21019166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 415
Target Start/End: Complemental strand, 2999 - 2926
Alignment:
| Q |
342 |
tggtattggagtatgagttgattgaaaatagcatcgtgttggtattacaagtggtgttggaatccacgggaatg |
415 |
Q |
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| T |
2999 |
tggttttggagtatgagtcggttgaaaattgcatcgtgtttgttttacaagtagtgttggaacccacaggaatg |
2926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 404
Target Start/End: Original strand, 7859323 - 7859420
Alignment:
| Q |
307 |
tagatgatttggtggagaatattaaagttctttcgtggtattggagtatgagttgattgaaaatagcatcgtgttggtattacaagtggtgttggaat |
404 |
Q |
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| T |
7859323 |
tagaggatttggtggagaatatcaaggttcttgcttggtattggagtatgagtaagctgataatagcgacgtgtttgtattatgagtggtgttcgaat |
7859420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 419
Target Start/End: Original strand, 4282174 - 4282363
Alignment:
| Q |
231 |
ttgatttggaatgcttcaacttgggctatatggaagcgaaggaatgacattgtatttaataatggtgtggccgaggtagatgatttggtggagaatatta |
330 |
Q |
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| T |
4282174 |
ttgatttggcttgcttctatttgggttatttggaagagaagaaatgaggttatctttaataatggtgttgtagagatggaggatgtggtcgagaatataa |
4282273 |
T |
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| Q |
331 |
aagttctttcgtggtattggagtatgagt-tgattgaaaatagcatcgtgttggtattacaagtggtgttggaatccacgggaatgttta |
419 |
Q |
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| T |
4282274 |
aggttctagcttggtattggagtatgagtaagctgaaaaatagcgacatgtttgtattatgagtggtgttggaaccctcgggattgttta |
4282363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 17192828 - 17192877
Alignment:
| Q |
24 |
gcggatgcatcgaagagttgtgtgttttgtgggaggatggaggaaacggc |
73 |
Q |
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| T |
17192828 |
gcggaggcatcgaaaaattgtgtgttgtgtgggagggtggaggaaacggc |
17192877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 23293501 - 23293457
Alignment:
| Q |
24 |
gcggatgcatcgaagagttgtgtgttttgtgggaggatggaggaa |
68 |
Q |
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| T |
23293501 |
gcggatgcatcgaagaattgtgtgttgtgtggaaggagggaggaa |
23293457 |
T |
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