View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9579_low_10 (Length: 393)
Name: NF9579_low_10
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9579_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 153 - 375
Target Start/End: Complemental strand, 8178082 - 8177860
Alignment:
| Q |
153 |
atgtctttcaagaagtaaatggtctaccttgtcaaaagaaatgatattattcattgaactaagactaacaatcacctgcaggaatggataatacgaaagc |
252 |
Q |
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| T |
8178082 |
atgtctttcaagaagtaaatggtctaccttgtcaaaagaaatgatattattcattgaactaagactaacaatcacctgcaggaatagataatacgaaagc |
8177983 |
T |
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| Q |
253 |
tgtaagtgtacaataggatagaccaaaagagtataacatgtttcatttaatgtaaatacttagtttcttgtgttgcaagagaaagaattaaagagtatac |
352 |
Q |
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| T |
8177982 |
tgtaagtgtacaataggatagaccaaaagagtatagcatgtttcatttgatgtaaatacttagtttcttgtgttgcaagagaaagaattgaagagtatac |
8177883 |
T |
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| Q |
353 |
ttcatcaaagacaggtacacttc |
375 |
Q |
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| T |
8177882 |
ttcatcaaagacaggtacacttc |
8177860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 8178217 - 8178130
Alignment:
| Q |
18 |
agggatactcgtgagttattgcttgagtttacacagaaataacctctcagccgtatgctctaattctgaagacaatatatgctaatcc |
105 |
Q |
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| T |
8178217 |
agggatactcgtgagttattgcttgagtttacacagaaataacctctcagccgtatgctctaattctgaagacaatatatgctaatcc |
8178130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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