View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9579_low_12 (Length: 357)
Name: NF9579_low_12
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9579_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 30121471 - 30121142
Alignment:
| Q |
18 |
aaaactcagtttaacataacaaagttaaaacagaaaaaatcaacttaaggggctaaattttcccattttgtctatgcatgtaattgttggcaaaacaaaa |
117 |
Q |
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| T |
30121471 |
aaaactcagtttaacataacaaagttaaaacagataaaatcaacttaaagggctaaattttcccattttgtctatgcatgtaattgttggcaaaacaaaa |
30121372 |
T |
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| Q |
118 |
aacctttaaacttacataatcatgaacagcctgaaatttacaacaatcatatgctttaattgaaaaatgttaattctttcagttatttattttttgatga |
217 |
Q |
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| T |
30121371 |
aacctttaaacttacataatcatgaacagcctgaaatttacaacaatcatatgctttaattgaaaaatgttaattctttcagttatttattttttgatga |
30121272 |
T |
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| Q |
218 |
acaaaaatttctgtcatttatagttatacaccaatcattataaatattttcatgaatacaggtaagatatgaaacaagaaatcgttacaaacaaaatcta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30121271 |
acaaaaatttctgtcatttatagttatacaccaatcattataaatattttcatgaatacaggtaagatatgaaacaagaaatcgttacaaacaaaatcta |
30121172 |
T |
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| Q |
318 |
aacagaaaacagaaaacaacctgtcctatg |
347 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30121171 |
aacagaaaacagaaaacaacctgtcctatg |
30121142 |
T |
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