View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9579_low_17 (Length: 300)
Name: NF9579_low_17
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9579_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 46427113 - 46427355
Alignment:
| Q |
18 |
ccaaggattcaccaataaccattcatcaaatcatacaaagtggaattgatataataaaacttaatcacaattaagtggaattgatataatgaagcttaag |
117 |
Q |
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| T |
46427113 |
ccaaggattcaccaataaccattcatcaaatcatacaaagtggaattgatataataaaacttaatcacatttaagtggaattgatataatgaagcttaag |
46427212 |
T |
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| Q |
118 |
gaaaatacaatccagccatgtaagaagtgttaaatagacacacgaacttcaattctgtatcaataatatataatgcagcttaagaaagatgcaatcaaat |
217 |
Q |
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| T |
46427213 |
gaaaatacaatccagccatgtaagaagtgttaaatagacacacgaacttcaattctgtatcaataatatataatgcagcttaagaaagatgcaatcaaat |
46427312 |
T |
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| Q |
218 |
tatgaagtgttaaattaacagttaattttggtcttttgtttgc |
260 |
Q |
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| T |
46427313 |
tatgaagtgttaaattaacagttaattttggtcttttgtttgc |
46427355 |
T |
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