View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9579_low_18 (Length: 295)
Name: NF9579_low_18
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9579_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 281
Target Start/End: Complemental strand, 40753237 - 40752981
Alignment:
| Q |
13 |
actgtgttttttcgtccataaatgtacttccggatagggtgcattataaaacatagaagtgtaaaagtaactctcagataaatcaataaacatcataaaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40753237 |
actgtgttttttcgtccataaatgtacttccggatagggtgcattataaaacatagaagtgtaaa-gtaactctcagataaatcaataaacatcataaaa |
40753139 |
T |
|
| Q |
113 |
attaacaaaacaagatatacatatatctatttacatcttctacttgtacacaacttgtttacatcattgatatcattacttgagtctaatatgagaaagt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40753138 |
attaacaaaacaagatatacatatatctatttacatcttctac-----------ttgtttacatcattgatatcattacttgagtctaatatgagaaagt |
40753050 |
T |
|
| Q |
213 |
ctattgttccaaatagagtgaagaatcatatgaaataagtcatacttgacaggaactttatgccacagg |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40753049 |
ctattgttccaaatagagtgaagaatcatatgaaataagtcatacttgacaggaactttatgccacagg |
40752981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 266
Target Start/End: Complemental strand, 54731 - 54677
Alignment:
| Q |
212 |
tctattgttccaaatagagtgaagaatcatatgaaataagtcatacttgacagga |
266 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
54731 |
tctattgtaccaaatagagtgaaggatcatatgaaatatatcatacttgacagga |
54677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University