View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9579_low_19 (Length: 292)

Name: NF9579_low_19
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9579_low_19
NF9579_low_19
[»] chr4 (3 HSPs)
chr4 (17-276)||(4625435-4625692)
chr4 (19-95)||(34786696-34786772)
chr4 (17-93)||(39635517-39635593)
[»] chr6 (2 HSPs)
chr6 (17-229)||(33822975-33823184)
chr6 (80-212)||(24572341-24572469)
[»] chr3 (2 HSPs)
chr3 (105-212)||(11309717-11309821)
chr3 (105-227)||(29566762-29566880)
[»] chr1 (2 HSPs)
chr1 (105-212)||(6303647-6303751)
chr1 (17-88)||(11867235-11867307)
[»] chr7 (2 HSPs)
chr7 (17-161)||(33810884-33811028)
chr7 (105-155)||(7041922-7041972)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 276
Target Start/End: Original strand, 4625435 - 4625692
Alignment:
Q  17 attcaagaggtggaggaacacttattttgtagatatagatttgttggaaggattttgtatgcaatttttaaatggattgaagcatggatgattttacccg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||    
T  4625435 attcaagaggtggaggaacacttattttgtagatatagatttgttggaaggattttgtatgcaatttttaaatggattggagcagggatgatttta-ccg 4625533  T
Q  117 gtaatattgtttcactcctttaatattttccatcatcttctttgggaaaaaagaaacaccgaaaagggcttactctcatttgacatgcaacaatttggca 216  Q
     |||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||    
T  4625534 ttaatattgtttcactcctttaatatttttcatcatattctttggggaaaaa-aaacatcgaaaagggcttactctcatttgacatgcaacaatttagca 4625632  T
Q  217 aatttgggaagctcgggatggaaaaatttagcaaagaaaaatgatagatttagttcatat 276  Q
    ||||| |||||||||||||| || |||||||||||||||||| ||||||||| |||||||    
T  4625633 aatttcggaagctcgggatgaaataatttagcaaagaaaaattatagatttaattcatat 4625692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 34786696 - 34786772
Alignment:
Q  19 tcaagaggtggaggaacacttattttgtagatatagatttgttggaaggattttgtatgcaatttttaaatggattg 95  Q
    |||||||| |||| | ||||| |||||||||| ||| ||||||||||| ||| |||| |||||||||||||||||||    
T  34786696 tcaagaggaggagaatcacttgttttgtagatgtagctttgttggaagtattctgtacgcaatttttaaatggattg 34786772  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 39635517 - 39635593
Alignment:
Q  17 attcaagaggtggaggaacacttattttgtagatatagatttgttggaaggattttgtatgcaatttttaaatggat 93  Q
    ||||||||||| || ||  | || |||||| ||||||| ||||||| || |||||  ||||||||||||||||||||    
T  39635517 attcaagaggtagatgataatttgttttgttgatatagctttgttgaaaagatttgatatgcaatttttaaatggat 39635593  T

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Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 33823184 - 33822975
Alignment:
Q  17 attcaagaggtggaggaacacttattttgtagatatagatttgttggaaggattttgtatgcaatttttaaatggattgaagcatggatgattttacccg 116  Q
    ||||||||||||||||| ||||| |||||||||||    ||||||||||||||||  |||||||||||||||||||||  | |  || ||||||||||||    
T  33823184 attcaagaggtggaggatcacttgttttgtagatactactttgttggaaggatttgttatgcaatttttaaatggattagaacgagggtgattttacccg 33823085  T
Q  117 gtaatattgtttcactcctttaatattttccatcatcttctttgggaaaaaagaaacaccgaaaagggcttactctcatttgacatgcaacaatttggca 216  Q
    |||||||||||||||||||| |||||||| |||||||||||||| | | |   ||||| | ||||||||| || |||||||||||| ||||||||||  |    
T  33823084 gtaatattgtttcactccttaaatatttttcatcatcttctttgagtata---aaacatcaaaaagggctcacactcatttgacattcaacaatttgaaa 33822988  T
Q  217 aatttgggaagct 229  Q
    ||||| |||||||    
T  33822987 aatttaggaagct 33822975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 80 - 212
Target Start/End: Original strand, 24572341 - 24572469
Alignment:
Q  80 atttttaaatggattgaagcatggatgattttacccggtaatattgtttcactcctttaatattttccatcatcttctttgggaaaaaagaaacaccgaa 179  Q
    |||||||||| ||| | | || || |||||||||| ||||||||||||||||||||| |  ||||| |||||||||||||||  |||   ||||| ||||    
T  24572341 atttttaaattgatcggaacaggggtgattttacctggtaatattgtttcactccttcacaatttt-catcatcttctttggctaaa---aaacatcgaa 24572436  T
Q  180 aagggcttactctcatttgacatgcaacaattt 212  Q
    | |||||||| |||||||| |||||||||||||    
T  24572437 aggggcttacactcatttggcatgcaacaattt 24572469  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 11309821 - 11309717
Alignment:
Q  105 tgattttacccggtaatattgtttcactcctttaatattttccatcatcttctttgggaaaaaagaaacaccgaaaagggcttactctcatttgacatgc 204  Q
    ||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||  |||   ||||  ||||| |||||||  |||||||| |||||    
T  11309821 tgattttacccggcaatattgtttcactccttgactattttccatcatcttctttggctaaa---aaacgtcgaaaggggcttaacctcatttggcatgc 11309725  T
Q  205 aacaattt 212  Q
    ||||||||    
T  11309724 aacaattt 11309717  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 29566880 - 29566762
Alignment:
Q  105 tgattttacccggtaatattgtttcactcctttaatattttccatcatcttctttgggaaaaaagaaacaccgaaaagggcttactctcatttgacatgc 204  Q
    |||||||| ||| ||||||||||| |||  || |||  ||| |||||||||||||  |||||||    || ||||||||||||||||| ||||| || |     
T  29566880 tgattttatccgataatattgttttactatttaaattgttttcatcatcttctttaagaaaaaa----catcgaaaagggcttactcttatttggcacgt 29566785  T
Q  205 aacaatttggcaaatttgggaag 227  Q
    ||  |||||| ||||||||||||    
T  29566784 aatcatttggaaaatttgggaag 29566762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 212
Target Start/End: Complemental strand, 6303751 - 6303647
Alignment:
Q  105 tgattttacccggtaatattgtttcactcctttaatattttccatcatcttctttgggaaaaaagaaacaccgaaaagggcttactctcatttgacatgc 204  Q
    ||||||||||| | |||||||||||||||||| | ||||||||||||||||||||||  |||   ||||  ||||| |||||||| |||||||| |||||    
T  6303751 tgattttaccccgcaatattgtttcactccttgactattttccatcatcttctttggctaaa---aaacgtcgaaaggggcttaccctcatttggcatgc 6303655  T
Q  205 aacaattt 212  Q
    ||||||||    
T  6303654 aacaattt 6303647  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 11867307 - 11867235
Alignment:
Q  17 attcaagaggtggaggaacacttatttt-gtagatatagatttgttggaaggattttgtatgcaatttttaaa 88  Q
    |||||||| || ||||| ||||| |||| |||||| ||| |||||||||||||||| ||||| ||||||||||    
T  11867307 attcaagatgtagaggatcacttgtttttgtagatgtagctttgttggaaggatttggtatgtaatttttaaa 11867235  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 161
Target Start/End: Complemental strand, 33811028 - 33810884
Alignment:
Q  17 attcaagaggtggaggaacacttattttgtagatatagatttgttggaaggattttgtatgcaatttttaaatggattgaagcatggatgattttacccg 116  Q
    ||||||||||||||||| || || |||||||||| ||| ||| ||| ||||||||  |||| |||||  |||||||||| | |  |  ||||||||||      
T  33811028 attcaagaggtggaggatcatttgttttgtagatgtagctttattgcaaggatttgatatggaatttaaaaatggattggaacgagtgtgattttaccaa 33810929  T
Q  117 gtaatattgtttcactcctttaatattttccatcatcttctttgg 161  Q
    ||||||||||||||||||   | |||||| |||| ||||||||||    
T  33810928 gtaatattgtttcactccgcgactatttttcatcctcttctttgg 33810884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 7041922 - 7041972
Alignment:
Q  105 tgattttacccggtaatattgtttcactcctttaatattttccatcatctt 155  Q
    ||||||||||||| |||||| ||||||||||| | ||||||||||||||||    
T  7041922 tgattttacccggcaatattttttcactccttgactattttccatcatctt 7041972  T

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