View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9579_low_21 (Length: 289)
Name: NF9579_low_21
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9579_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 282
Target Start/End: Complemental strand, 43796610 - 43796348
Alignment:
| Q |
20 |
attaagtcctttaaaatctctattcgggtgagacctcatgtgaccatacaaagcattcttggttggaaacttcttctcgcagatagaacaagttggtttc |
119 |
Q |
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| T |
43796610 |
attaagtcctttaaaatctctattcgggtgagacctcatgtgaccatacaaagcattcttggttggaaacttcttctcgcagatagaacaagttggtttc |
43796511 |
T |
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| Q |
120 |
ttgatcggtttctttatgccaccaatttcttcttcatcatcataatcatcaaaactagccctattattattaccttgtattgaaaaagggcttcttacct |
219 |
Q |
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| T |
43796510 |
ttgatcggtttctttatgccaccaatttcttcttcatcatcataatcatcaaaactagccctattattattaccttgtattgaaaaagggctttttacct |
43796411 |
T |
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| Q |
220 |
tttgtggatgatgatttagtttcttcttaagaaagtgagatctccggtggccaccctatgctt |
282 |
Q |
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| T |
43796410 |
tttgtggatgatgatttagtttcttcttaagaaagtgagatctccggtggccacccaatgctt |
43796348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 268
Target Start/End: Complemental strand, 43796187 - 43796086
Alignment:
| Q |
167 |
atcaaaactagccctattattattaccttgtattgaaaaagggcttcttaccttttgtggatgatgatttagtttcttcttaagaaagtgagatctccgg |
266 |
Q |
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| T |
43796187 |
atcaaaactagccctattataactaccttgtattgagagaggggtttttaccttttgtgaacgatgattaagtttctttttaagaaagtgagatctgcgg |
43796088 |
T |
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| Q |
267 |
tg |
268 |
Q |
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|| |
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| T |
43796087 |
tg |
43796086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 28847348 - 28847414
Alignment:
| Q |
55 |
tcatgtgaccatacaaagcattcttggttggaaacttcttctcgcagatagaacaagttggtttctt |
121 |
Q |
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| T |
28847348 |
tcatgtgaccataaaaaacattcttgattggaaacttgttctcgcaaatataacaagtttgtttctt |
28847414 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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