View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9579_low_22 (Length: 287)
Name: NF9579_low_22
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9579_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 40835241 - 40835510
Alignment:
| Q |
1 |
ttactaatgcattgccagacttggctatggtttccccagttgctatacaaataatagaaacaaaaagctggttccaccctttttcaatctgcatcatcat |
100 |
Q |
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| T |
40835241 |
ttactaatgctttgccagacttggctatggtttccccagtttctatacaaataatagaaacaaaaagctggttccaccctttttcaatctgcatcatcat |
40835340 |
T |
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| Q |
101 |
aaataaataaattgtatagacaatatgattactaaatttgaaatgtgacaaaatcacaatcatcacatccagaaaaaagaaacattcaacaattactacc |
200 |
Q |
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| T |
40835341 |
aaataaataaattgtatagacaatatgattactaaatttgaaatgtgacaaaatcacaatcatcatatccagaaaaaagaaacattcaacaattactacc |
40835440 |
T |
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| Q |
201 |
atattttgatcatggaaatgaaggtgccaaaataactttattagataattgtaaaaatgaccattattgt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40835441 |
atattttgatcatggaaatgaaggtgccaaaataactttattagataattgtaaaaatgaccattattgt |
40835510 |
T |
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