View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9579_low_23 (Length: 262)
Name: NF9579_low_23
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9579_low_23 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 14 - 262
Target Start/End: Original strand, 40834920 - 40835172
Alignment:
| Q |
14 |
caaaggcaatgatgcagtaaatgtttcttgcccaatgtaacttgataaattaatggtagcttcgccaagggtcccaaacctgggagatccctgcattatc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40834920 |
caaaggcaatgatgcagtaaatgtttcttgcccaatgtaacttgataaattaatggtagcttcgccaagggtcccaaacctgggagatccctgcattatc |
40835019 |
T |
|
| Q |
114 |
acaaagcc-----atacgactcatttcagaatatatttagtgttccttctatttttgaagttgnnnnnnnnnnnnnnataaaagaaaatgtgaagtttta |
208 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
40835020 |
acaaagccatacgatacgactcatttcagaatatatttagtgttccttctatttttgaagttg-ttttttcttttttacaaaagaaaatgtgaagtttta |
40835118 |
T |
|
| Q |
209 |
tgaacaaaaacaaaccattgctacaagaagcttaaggaggcaggcttgattatc |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40835119 |
tgaacaaaaacaaaccattgctacaagaagcttaagaaggcaggcttgattatc |
40835172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University