View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9579_low_29 (Length: 224)

Name: NF9579_low_29
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9579_low_29
NF9579_low_29
[»] chr5 (2 HSPs)
chr5 (6-185)||(2339837-2340016)
chr5 (62-115)||(12576969-12577021)
[»] chr8 (4 HSPs)
chr8 (6-182)||(7749878-7750057)
chr8 (57-115)||(4011199-4011256)
chr8 (57-93)||(38178390-38178426)
chr8 (57-93)||(45512625-45512661)
[»] chr7 (1 HSPs)
chr7 (61-90)||(29229614-29229643)
[»] chr4 (4 HSPs)
chr4 (62-115)||(47147494-47147546)
chr4 (57-93)||(31339651-31339687)
chr4 (62-114)||(49987529-49987580)
chr4 (62-114)||(53540411-53540462)
[»] chr3 (1 HSPs)
chr3 (57-93)||(31261072-31261108)
[»] chr1 (1 HSPs)
chr1 (57-93)||(6025721-6025757)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 2339837 - 2340016
Alignment:
Q  6 gaggagaagcataggttgtatagtaggagaattgattatgaagtgcagcctaatcgctagaggcagaggaagaccaagaaaaactataggctaaaactat 105  Q
    |||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2339837 gaggagattcataggttgtatagtaggagaattgattatggagtgcagcctaatcgctagaggcagaggaagaccaagaaaaactataggctaaaactat 2339936  T
Q  106 taagaaagatttatatttcgatggtttagttattgacgtgattgatccatctagccactcacctaatgggataatgcgtg 185  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  2339937 taagaaagatttatatttcaatggtttagttattgacgtgatcgatccatctagccactcacctaatgggatactgcgtg 2340016  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 12577021 - 12576969
Alignment:
Q  62 ctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagat 115  Q
    ||||||||||||||||||| |||||||||| | | | |||||||||||||||||    
T  12577021 ctagaggcagaggaagacctagaaaaactacaagat-aaactattaagaaagat 12576969  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 6 - 182
Target Start/End: Original strand, 7749878 - 7750057
Alignment:
Q  6 gaggagaagcataggttgtatagtaggagaattgatta--tgaagtgcagcctaatcgctagaggcagaggaagaccaagaaaaactataggctaaaact 103  Q
    |||||||  |||||||| | |||||||||| |||||||  ||  | ||| ||||||||| ||||||||||||| |||||| |||||||||||| ||||||    
T  7749878 gaggagactcataggttctgtagtaggagagttgattagatggtgggcaacctaatcgccagaggcagaggaataccaagcaaaactataggcaaaaact 7749977  T
Q  104 attaagaaagatttatatttcgatggtttagttattgacgtgattgatccatctagc-cactcacctaatgggataatgc 182  Q
    ||||||||||||||| || ||  |||||||| ||| ||  |||||||||||| ||||  |||||||||||  ||||||||    
T  7749978 attaagaaagatttagatgtcagtggtttagctatagatatgattgatccatatagctgactcacctaataagataatgc 7750057  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 4011199 - 4011256
Alignment:
Q  57 aatcgctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagat 115  Q
    ||||||||||| |||||||||||| |||||||||||| |   |||||||||||||||||    
T  4011199 aatcgctagagacagaggaagacctagaaaaactataag-agaaactattaagaaagat 4011256  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 38178426 - 38178390
Alignment:
Q  57 aatcgctagaggcagaggaagaccaagaaaaactata 93  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  38178426 aatcgctagaggtagaggaagacctagaaaaactata 38178390  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 45512661 - 45512625
Alignment:
Q  57 aatcgctagaggcagaggaagaccaagaaaaactata 93  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  45512661 aatcactagaggcagaggaagacctagaaaaactata 45512625  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 29229643 - 29229614
Alignment:
Q  61 gctagaggcagaggaagaccaagaaaaact 90  Q
    ||||||||||||||||||||||||||||||    
T  29229643 gctagaggcagaggaagaccaagaaaaact 29229614  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 47147494 - 47147546
Alignment:
Q  62 ctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaagat 115  Q
    ||||||||||||||||||| |||||||||||| |   |||||||||||||||||    
T  47147494 ctagaggcagaggaagacctagaaaaactata-gaagaaactattaagaaagat 47147546  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 31339651 - 31339687
Alignment:
Q  57 aatcgctagaggcagaggaagaccaagaaaaactata 93  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  31339651 aatcactagaggcagaggaagacctagaaaaactata 31339687  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 49987529 - 49987580
Alignment:
Q  62 ctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaaga 114  Q
    ||||||||||||||||||| |||||||||||| |   ||||||||||||||||    
T  49987529 ctagaggcagaggaagacctagaaaaactataag-agaaactattaagaaaga 49987580  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 53540411 - 53540462
Alignment:
Q  62 ctagaggcagaggaagaccaagaaaaactataggctaaaactattaagaaaga 114  Q
    ||||||||||||||||||| |||||||||||| | | ||||||||| ||||||    
T  53540411 ctagaggcagaggaagacctagaaaaactataagat-aaactattaggaaaga 53540462  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 31261108 - 31261072
Alignment:
Q  57 aatcgctagaggcagaggaagaccaagaaaaactata 93  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  31261108 aatcactagaggcagaggaagacctagaaaaactata 31261072  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 6025721 - 6025757
Alignment:
Q  57 aatcgctagaggcagaggaagaccaagaaaaactata 93  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  6025721 aatcactagaggcagaggaagacctagaaaaactata 6025757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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