View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9579_low_4 (Length: 461)
Name: NF9579_low_4
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9579_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 21 - 439
Target Start/End: Complemental strand, 49109802 - 49109378
Alignment:
| Q |
21 |
gtataactggagtgtatgtagttcgattgccttcagnnnnnnnnnn---ggcaggattcatggcctaatggctccacacgatatttccacaaattcaaga |
117 |
Q |
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| T |
49109802 |
gtataactggagtgtatgtagttcgattgccttcagttttttcttttttggcaggattcatggcctaatggctccacacgatatttccacaaattcaaga |
49109703 |
T |
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| Q |
118 |
cgtttgaatttctattataagtcata----gtttatggcttttcagtatcctccaagagtgtattatatgaggattgaattgcaattttctccatacagt |
213 |
Q |
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| T |
49109702 |
cgtttga-tttctattataagtcatacatagtttatggcttttcagtatcctccaagagtgtattatatgagggttgaattgcaattttctccatacagt |
49109604 |
T |
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| Q |
214 |
tcatcattgactaatgagctaagtcatagttatttagtttctagctataattcaaatttgaggataaaagtaccaactaaactgtgaactcgatcattaa |
313 |
Q |
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| T |
49109603 |
tcatcattgactaatgagctaagtcatagttatttagtttctagctataattcaaatttgaggataaaagtaccaactaaactgtgaactcgatcattaa |
49109504 |
T |
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| Q |
314 |
aactgataagttgtgaaaatgatcaaagtttagatcctgggaatggtaaaaacttattaactactactagtatttaagaagtttctggattagaaattaa |
413 |
Q |
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| T |
49109503 |
aactgataagttgtgacaatgatcaaagtttagatcctgggaatggtaaaaacttattaactactactagtatttaagaagtttctggattagaaattaa |
49109404 |
T |
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| Q |
414 |
aatttcaaaatgttacattaaggact |
439 |
Q |
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| T |
49109403 |
aatttcaaaatgttatattaaggact |
49109378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 130 - 439
Target Start/End: Complemental strand, 49534636 - 49534319
Alignment:
| Q |
130 |
tattataagtcatagtttatggcttttcagtatcctcc------aagagtgtattatatgaggattgaattgcaattttctccatacagttcatcattga |
223 |
Q |
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| T |
49534636 |
tattataagtcatagtttatagcttttcagtatcctccgactccaagtgtgtattatgtgaggattgaactgcaaaattttccataaagttcatcattaa |
49534537 |
T |
|
| Q |
224 |
ct-aatgagctaagtcatagttatttagtttctagctataattcaaatttgaggataaaagtaccaactaaactgtgaactcgatcattaaaactgataa |
322 |
Q |
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| T |
49534536 |
cttaatgagctaagtcatagttatttagtttccagctataattcaaatttgaggataaaagtaccaactaaactgtgaagtcgagcattaaaactgataa |
49534437 |
T |
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| Q |
323 |
gttgtgaaaatga-tcaaagtttagatcctgggaatggtaaaaacttattaactactactagtatttaagaagtttctggattagaaattaaaatttcaa |
421 |
Q |
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| T |
49534436 |
gttgggagaatgacttaaagtttcgatcctgagaatggtaaaaacttgttagcaactactagtatttaagaagattctggattagaagttaaaatttcaa |
49534337 |
T |
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| Q |
422 |
aatgttacattaaggact |
439 |
Q |
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| T |
49534336 |
aaagttacattaaggact |
49534319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 83 - 322
Target Start/End: Complemental strand, 49108014 - 49107772
Alignment:
| Q |
83 |
taatggctccacacgatatttccacaaattcaagacgtttgaatttctattataagtcatagtttatggcttttcagtatcctccaagagtgtattatat |
182 |
Q |
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| T |
49108014 |
taatgactccacacaatatttccacaaatataagacatttgaatttgtattataagtcatagtttatggcttttcagtatcctccaagagtgtatcatgt |
49107915 |
T |
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| Q |
183 |
gaggattgaattgcaattttctccatacagttcatcattgactaatgagctaagtcatagttatttagtttctagc----tataattcaaatttgaggat |
278 |
Q |
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| T |
49107914 |
gaggattgaattgcaattttttccataaagttcatcattgactaatgagctaagtcatagtta-ttagtttgtagctatatataagtcaaatttgaggat |
49107816 |
T |
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| Q |
279 |
aaaagtaccaactaaactgtgaactcgatcattaaaactgataa |
322 |
Q |
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| T |
49107815 |
aaaagtaccaactagactgtgaactggggcattaaaactgataa |
49107772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 49534702 - 49534656
Alignment:
| Q |
88 |
gctccacacgatatttccacaaattcaagacgtttgaatttctatta |
134 |
Q |
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| T |
49534702 |
gctccacacaatatttccaaaaattcaagacatttgaatttttatta |
49534656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 356 - 439
Target Start/End: Complemental strand, 38176320 - 38176237
Alignment:
| Q |
356 |
atggtaaaaacttattaactactactagtatttaagaagtttctggattagaaattaaaatttcaaaatgttacattaaggact |
439 |
Q |
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| T |
38176320 |
atggtaaaaacttattaacaactactggtatttaagaagtttctggatcagaagataaaattccaaaaagttacattaaggact |
38176237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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