View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9579_low_7 (Length: 439)
Name: NF9579_low_7
Description: NF9579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9579_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 20 - 436
Target Start/End: Complemental strand, 37658405 - 37657981
Alignment:
| Q |
20 |
tgcagcgtaacgatggaagttggaatttggggaaagtgtgatcgatcaatcgttcaatccaaactgtgtcttaactcatttccctatttttcttttctta |
119 |
Q |
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| T |
37658405 |
tgcagcgtaacgatggaagttggaatttggggaaagtgtgatcgatcaatcgttcaatccaaactgtgtcttaactcatttccctatttttcttttctta |
37658306 |
T |
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| Q |
120 |
ctattattacatacattgnnnnnnn----ataacttacatttagtttttggagtaaaatttcattctagtaaatagtaaacttcaaaaatcaagttactc |
215 |
Q |
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| T |
37658305 |
ctattattacatacattttttttttttttataacttacatttagtttttggagtaaaatttcattctagtaaatagtaaacttcaaaaatcaagttactc |
37658206 |
T |
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| Q |
216 |
ctaaacacaattttaaacatttcattaattaaagtagcattaaccattatttttcttcttnnnnnnnnctactttataaatgtcctaaaaataatttaat |
315 |
Q |
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| T |
37658205 |
ctaaacacaattttaaacatttcattaattag-gtagcattaaccattatttttcttcttaaaaaaaactactttataaatgtcctaaaaataatttaat |
37658107 |
T |
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| Q |
316 |
ctttatattttaacgacgttttgaaacaaata-----atttgtttggtgtacaatgataaagagttgaataagtataaaatatgatatgataggataaat |
410 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
37658106 |
ctttatattttaacgacgttttgaaacaaatactgtaatttgtttggtgtacaatgataaaaagttgaataagtataaaatataatatgataggataaat |
37658007 |
T |
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| Q |
411 |
acctatcttataatatgttagtctct |
436 |
Q |
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| T |
37658006 |
acctatcttataatatgttagtctct |
37657981 |
T |
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