View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9580_high_1 (Length: 786)
Name: NF9580_high_1
Description: NF9580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9580_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 3544609 - 3544344
Alignment:
| Q |
1 |
ttgatatcttctttacaaatgatgcactcgatcgtgtcctagatatgctcactgatagagcagttatcgttagttgtcgctcgctttggccaatcacact |
100 |
Q |
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| T |
3544609 |
ttgatatcttctttacaaacgatgcactcgatcgtgtcctagatatgctcactgatagagcagttatcgttagttgtcgctcgctttggccaatcacact |
3544510 |
T |
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| Q |
101 |
cgcataccccatgagacattgaacacataaaacaggatagcgagtagctctgcatgaggacttgatgaactctgacggggttatagaggattctgcagtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3544509 |
cgcataccccatgagacattgaacacataaaacaggatagcgagtagctctgcatgaggacctgatgaactctgacggggttatagaggattctgcagtg |
3544410 |
T |
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| Q |
201 |
acaagactcatgaagaccagcaaataaaccccggctctagccgccatgtttactagcaatgtagtg |
266 |
Q |
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| T |
3544409 |
acaagactcatgaagaccagcaaataaaccccggctctagccgccatgtttactagcaatatagtg |
3544344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 335 - 592
Target Start/End: Complemental strand, 3544283 - 3544026
Alignment:
| Q |
335 |
ggaaataggactgtagaaagtgggagacatgtattattgtatctatatgtgactgtgaatggattgctaccgtatcccactttctttttnnnnnnnggaa |
434 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3544283 |
ggaaataggactgtaggaagtgggagacatgtattattgtatctatatgtgactgtgaatggattgctaccgtatcccactttcttttttaaaaaaggaa |
3544184 |
T |
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| Q |
435 |
aatattggcaggttatctttaaatttattaatatattcttttgaagatatcgcttcttttttgacaagttttaaagataaagcaacttttgttgacatgt |
534 |
Q |
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| T |
3544183 |
aatattggcaggttatctttaaatttattaatatattcttttgaagatatcgcttcttttttgacaagttttaaagataaagcaacttttgttgacatgt |
3544084 |
T |
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| Q |
535 |
tttaagtggcactgctttcccttgnnnnnnntctgcttagccgcatcctcccagtggt |
592 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
3544083 |
tttaagtggcactgctttcccttgaaaaaaatctgcttagccgcatcctcctagtggt |
3544026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 682 - 769
Target Start/End: Complemental strand, 3543977 - 3543890
Alignment:
| Q |
682 |
actcaataaaatttaacattctatctaatatgtcaatgtaaacccactactaccacttagtataattcatcatccatcaagctgatgt |
769 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
3543977 |
actcaataaaatttaacattctatctaatttgtcaatgtaaacccacaactaccacttagtataattcatcatccatcaagcttatgt |
3543890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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