View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9580_high_3 (Length: 458)
Name: NF9580_high_3
Description: NF9580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9580_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 4776299 - 4775855
Alignment:
| Q |
1 |
ctgtgtctactcccatggccacctcattctgctcgcaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatacttggtgccttaca |
100 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
4776299 |
ctgtgtctactcccatggccacctcattctgctcacaacctaaacccgactccacatactgtgacagtaaggaatttcgcagtatgcttggtgccttaca |
4776200 |
T |
|
| Q |
101 |
ctacctttcaatcactcgcccagacatagcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagaga |
200 |
Q |
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| T |
4776199 |
ctacctttcaatcactcgcccagacattgcatttccagtgaataaactagcataacaaatgcaagctcctactgtgacagatatgcaagccttgaagaga |
4776100 |
T |
|
| Q |
201 |
gtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaagcctcacaagcttttgtgatgcagattgggcaggag |
300 |
Q |
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| T |
4776099 |
gtattgcgctatctcaaatccaccatctccaatggactccatctcacaagatcttcaaatacaaacctcacaagcttttgtgatgcagattaggcaggag |
4776000 |
T |
|
| Q |
301 |
acacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtc |
396 |
Q |
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||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4775999 |
acacaattgacaggaaatcaacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtc |
4775900 |
T |
|
| Q |
397 |
aactgaagctgaatatcgtactatagcagccactactcaagaatt |
441 |
Q |
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| T |
4775899 |
aactgaagctgaatatcgtactatagcagccactactcaagaatt |
4775855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 261 - 441
Target Start/End: Complemental strand, 43061400 - 43061216
Alignment:
| Q |
261 |
acaagcctcacaagcttttgtgatgcagattgggcaggagacacaattgacagga----aacaggtgcttatttaatttatattggccctaatattatct |
356 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||| |
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| T |
43061400 |
acaagcctcacaaacttttgtgatgcagattgggcaggagacacaattgacaggatatgaacaggtgcttatttcatttattttggccctaatattatct |
43061301 |
T |
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| Q |
357 |
cttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgtactatagcagccactactcaagaatt |
441 |
Q |
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||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
43061300 |
cttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcggactatagcagccactactcaggaatt |
43061216 |
T |
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