View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9580_high_4 (Length: 398)
Name: NF9580_high_4
Description: NF9580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9580_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 388
Target Start/End: Complemental strand, 12536332 - 12535963
Alignment:
| Q |
19 |
actatgcttcctcttctgtctctattatttccaaaaacaacaataagttgtttcctccttctcgtccttctgtttcataccttcgttccttctcctcaaa |
118 |
Q |
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| T |
12536332 |
actatgcttcctcttctgtctctattatttccaaaaacaacaacaaattgtttcctccttcttgtccttgtgtttcataccttcgttccttctcctcaaa |
12536233 |
T |
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| Q |
119 |
ttcaacagcatcctctgtttttggagaaattataaaaaatctccgaaattctcccccagttacaacatcatcatcctcctctaagtctaacaatattaat |
218 |
Q |
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| T |
12536232 |
ttcaacaacatcctctgtttttggagaaattataaaaaatctccgaaattctcccccagttacaacatcatcatcctcctctaagtctaacaatattaat |
12536133 |
T |
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| Q |
219 |
cctatggttgttatctcatgcgagcttacaggtatggctgtttcacagttcaaatccatgctatctactagtactaggggtctctattccatatctgatt |
318 |
Q |
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| T |
12536132 |
cctatggttgttatctcatgcgagcttacaggtatggctgtttcacagttcaaatccatgctatctactagtactaggggtctctattccatatctgatt |
12536033 |
T |
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| Q |
319 |
ataactacattttatcttcccttagctcccagggtttgtctggtaccattcttagacttggtcgtctgtg |
388 |
Q |
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| T |
12536032 |
ataactacattttatcttcccttagctcccagggtttgtctgatactattcttagacttggtcgtctgtg |
12535963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 12539836 - 12539902
Alignment:
| Q |
54 |
aacaacaataagttgtttcctccttctcgtccttctgtttcatacc---ttcgttccttctcctcaa |
117 |
Q |
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| T |
12539836 |
aacaataacaagctgtttcctcctcctcgtccttttgtttcataccttattcgttccttctcttcaa |
12539902 |
T |
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