View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9580_low_11 (Length: 346)
Name: NF9580_low_11
Description: NF9580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9580_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 14 - 330
Target Start/End: Original strand, 26376557 - 26376873
Alignment:
| Q |
14 |
tggtgttggttatattactcttgaaattccttgtttgtctgatgcattgcaagatattcctgttactgtttattggataactgcttccattattgccgct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26376557 |
tggtgttggttatattactcttgaaattccttgtttgtctgatgcattgcaagatattcctgttgctgtttattggataactgcttccattattgccgct |
26376656 |
T |
|
| Q |
114 |
attggcaacatcattagtgtatcggactatacactatcagattctaacgacaaactttattttgttgattctaagttgaaggaacctctgaatactgctg |
213 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26376657 |
attggcaacaacattagtgtatcggactatacactatcagattctaaagacaaactttattttgttgattctaagttgaaggaacctctgaatactgctg |
26376756 |
T |
|
| Q |
214 |
ttgatttccaggcgaagaaaactcccaagacttttaattcttcaacagattacaagaactcctttatgcctccgctgcttgagggaacacactctgactt |
313 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26376757 |
ttgatttccaggcaaagaaaactcccgagacttttaattcttcaacagattacaagaactcctttatgcctctgctgcttgagggaacacactctgactt |
26376856 |
T |
|
| Q |
314 |
atattcaaacttattaa |
330 |
Q |
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||||||||||||||||| |
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| T |
26376857 |
atattcaaacttattaa |
26376873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 207 - 329
Target Start/End: Original strand, 22692982 - 22693104
Alignment:
| Q |
207 |
actgctgttgatttccaggcgaagaaaactcccaagacttttaattcttcaacagattacaagaactcctttatgcctccgctgcttgagggaacacact |
306 |
Q |
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| T |
22692982 |
actgctgttgatttccaggtgaagaaaattccagagacttttaattcttcaacagattacaagaactactttatgcctccactgcttgaggaaacacact |
22693081 |
T |
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| Q |
307 |
ctgacttatattcaaacttatta |
329 |
Q |
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|||||||||||||||||| |||| |
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| T |
22693082 |
ctgacttatattcaaactcatta |
22693104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 33237273 - 33237396
Alignment:
| Q |
14 |
tggtgttggttatattactcttgaaattccttgtttgtctgatgcattgcaagatattcctgttactgtttattggataactgcttccattattgccgct |
113 |
Q |
| |
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|||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| | |||| ||| |
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| T |
33237273 |
tggtgttggttataacactcttgatgttccttctttgtctgatgcattgcaagatattcctgttgctgtttattggataattgcttccactgttgctgct |
33237372 |
T |
|
| Q |
114 |
attggcaacatcattagtgtatcg |
137 |
Q |
| |
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| |||||| |||||| |||||||| |
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| T |
33237373 |
actggcaatatcattggtgtatcg |
33237396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 33237656 - 33237724
Alignment:
| Q |
137 |
ggactatacactatcagattctaacgacaaactttattttgttgattctaagttgaaggaacctctgaa |
205 |
Q |
| |
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|||||||||||||||||||| ||| || |||||| ||||||||||||||||||||||||||| |||||| |
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| T |
33237656 |
ggactatacactatcagattttaaagaaaaacttaattttgttgattctaagttgaaggaacatctgaa |
33237724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 222 - 325
Target Start/End: Complemental strand, 32616101 - 32615998
Alignment:
| Q |
222 |
caggcgaagaaaactcccaagacttttaattcttcaacagattacaagaactcctttatgcctccgctgcttgagggaacacactctgacttatattcaa |
321 |
Q |
| |
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|||| |||||||| ||| |||| |||||||| |||||||||||||||||||||| || ||||| |||| |||| ||||||||||||||||||||||| |
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| T |
32616101 |
caggtgaagaaaattcctgagacctttaattcaccaacagattacaagaactccttcattcctccattgctggaggaaacacactctgacttatattcaa |
32616002 |
T |
|
| Q |
322 |
actt |
325 |
Q |
| |
|
|||| |
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|
| T |
32616001 |
actt |
32615998 |
T |
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