View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9580_low_12 (Length: 278)
Name: NF9580_low_12
Description: NF9580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9580_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 29 - 270
Target Start/End: Original strand, 36495700 - 36495939
Alignment:
| Q |
29 |
ttaagacattgctaattggtgcttaaaaggatgtgggtagttgttatcaatctgctattcggtttttctttgataaagtgccagtttatcgcaatgtgtt |
128 |
Q |
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| T |
36495700 |
ttaacacattgctaattggtgcctaaaaggatgtgggtagttgttatcaatctgctatttggtttttctttgataaagtgccagtttatcacaatgtgtt |
36495799 |
T |
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| Q |
129 |
ttgtctgtcatgctgaacaagattatgcgcaatactaagagctgatttattgtcacaaaataacttcatccagttctcatactttatcattatgccatca |
228 |
Q |
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| T |
36495800 |
ttgtctgtcatgctgaacaagattatgcgcaatactaagagctgatttattgtcac--aataacttcatccagttctcatactttatcattatgccatca |
36495897 |
T |
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| Q |
229 |
agcacaattttcatccacaatagcttacatgttccctatgct |
270 |
Q |
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| T |
36495898 |
agcacaattttcatccacaatagctcacatattccctgtgct |
36495939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 202
Target Start/End: Complemental strand, 7707744 - 7707661
Alignment:
| Q |
120 |
caatgtgttttgtct-gtcatgctgaacaagattatgcgcaatactaagagctgatttattgtcacaaaataacttcatccagt |
202 |
Q |
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| T |
7707744 |
caatgtgttttgtcttgtcatgctgaacaagattttaagcaatactaatggccgatttattgccacaaaacaacttcatacagt |
7707661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 197
Target Start/End: Complemental strand, 27471760 - 27471657
Alignment:
| Q |
95 |
tctttgataaagtgccagtttatcgcaatgtgttttgtc-tgtcatgctgaacaagattatgcgcaatactaagagctgatttattgtcacaaaataact |
193 |
Q |
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| T |
27471760 |
tctttgatgaaatgccggtcaatctcaatgtgttttgtcctttcattctgaacaagattatgtgcaatattaatggatgatttgtagtcacaaaacaact |
27471661 |
T |
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| Q |
194 |
tcat |
197 |
Q |
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|||| |
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| T |
27471660 |
tcat |
27471657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 14302642 - 14302594
Alignment:
| Q |
149 |
gattatgcgcaatactaagagctgatttattgtcacaaaataacttcat |
197 |
Q |
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| T |
14302642 |
gattatgcgcaatactaatggtcgatttattgtcacaaaacaacttcat |
14302594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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