View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9580_low_15 (Length: 252)
Name: NF9580_low_15
Description: NF9580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9580_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 18049646 - 18049421
Alignment:
| Q |
1 |
taaatctggttgtatatattccttcctcaaatttcttttttacaaaataccttaattatttttactcttctctctgagaattattaaagattgattgatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18049646 |
taaatctggttgtatatattccttcctcaaatttcttttttacaaaataccttaattatttttactcttctctctgagaattattaaagatagattgatc |
18049547 |
T |
|
| Q |
101 |
gtcatttaaccttctacaattnnnnnnnnnnnnnnnnnnnnnntagtttctctcatcatccatgaaattttcgtgtccaattttttcaataaaacttaaa |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18049546 |
gtcatttaaccttctacaattaaaaaaaaacaaaaaacaaaaatagtttctctcatcatccatgaaattttcatgtccaattttttcaataaaacttaaa |
18049447 |
T |
|
| Q |
201 |
accagatcgatcaaacccccaatact |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
18049446 |
accagatcgatcaaacccccaatact |
18049421 |
T |
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