View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9580_low_19 (Length: 211)
Name: NF9580_low_19
Description: NF9580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9580_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 6264197 - 6264380
Alignment:
| Q |
16 |
ctgataacactggtaaaggactaatttggctaagtatatctgttggtagcttaattcctccttcatatagatcaagcacatcatcaaagctatcaaattc |
115 |
Q |
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| T |
6264197 |
ctgataacactggtaaaggactaatttggctaagtatatctgttggtagcttaattcctccttcatatagatcaagcacatcatcaaagctatcaaattc |
6264296 |
T |
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| Q |
116 |
attcggtgtgaagttcgtgtcaaatacagattgtatcaatggaattacatcttgagaaacagacttaagtccataaacacgaaa |
199 |
Q |
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| T |
6264297 |
attcggtgtgaagttcgtgtcaaatacagattgtatcaatggaattacatcttgagaaacagacttaagtccataaacaagaaa |
6264380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 6451734 - 6451822
Alignment:
| Q |
39 |
atttggctaagtatatctgttggtagcttaattcctccttcatatagatcaagcacatcatcaaagctatcaaattcattcggtgtgaa |
127 |
Q |
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| T |
6451734 |
atttggctgagtatatctgtaggaagcttaattccaccttcgaaaagtccacgcacttcatcgaagctatcaaactcattcggggtgaa |
6451822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 6457812 - 6457864
Alignment:
| Q |
27 |
ggtaaaggactaatttggctaagtatatctgttggtagcttaattcctccttc |
79 |
Q |
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| T |
6457812 |
ggtaagggactaatttgactaagtatatctgtaggaagcttaatcccaccttc |
6457864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 127
Target Start/End: Original strand, 42693904 - 42694004
Alignment:
| Q |
27 |
ggtaaaggactaatttggctaagtatatctgttggtagcttaattcctccttcatatagatcaagcacatcatcaaagctatcaaattcattcggtgtga |
126 |
Q |
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| T |
42693904 |
ggtaacggacttatcttgctaagtacatctgttggcagcttaattccaccctcatacaatccatgaacttcatcaaagctatcaaactcatttggtgtga |
42694003 |
T |
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| Q |
127 |
a |
127 |
Q |
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| T |
42694004 |
a |
42694004 |
T |
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