View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9580_low_8 (Length: 402)

Name: NF9580_low_8
Description: NF9580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9580_low_8
NF9580_low_8
[»] chr7 (18 HSPs)
chr7 (182-389)||(556425-556633)
chr7 (1-100)||(16677721-16677820)
chr7 (1-100)||(17651957-17652056)
chr7 (35-147)||(5540878-5541002)
chr7 (39-147)||(46739848-46739969)
chr7 (86-147)||(16675528-16675589)
chr7 (84-144)||(16675400-16675460)
chr7 (86-144)||(17649768-17649826)
chr7 (96-146)||(45257605-45257655)
chr7 (84-146)||(17462687-17462749)
chr7 (84-146)||(17590465-17590527)
chr7 (84-146)||(35609809-35609871)
chr7 (84-146)||(41881108-41881170)
chr7 (84-143)||(9370783-9370842)
chr7 (84-143)||(48403978-48404037)
chr7 (3-54)||(45257741-45257792)
chr7 (211-318)||(14689866-14689974)
chr7 (219-308)||(17741274-17741364)
[»] chr8 (16 HSPs)
chr8 (182-389)||(35551751-35551959)
chr8 (1-147)||(35552276-35552434)
chr8 (1-147)||(20857896-20858054)
chr8 (272-389)||(39491192-39491310)
chr8 (210-324)||(45127900-45128014)
chr8 (35-147)||(5677680-5677804)
chr8 (8-147)||(45128359-45128510)
chr8 (84-146)||(1053142-1053204)
chr8 (84-146)||(23021714-23021776)
chr8 (84-143)||(24920-24979)
chr8 (84-143)||(26660067-26660126)
chr8 (95-147)||(34369968-34370022)
chr8 (95-147)||(34371285-34371339)
chr8 (1-54)||(34369819-34369872)
chr8 (1-54)||(34371147-34371200)
chr8 (269-317)||(22495064-22495113)
[»] chr4 (25 HSPs)
chr4 (184-389)||(41933404-41933610)
chr4 (1-147)||(30704634-30704792)
chr4 (1-147)||(50194089-50194247)
chr4 (35-147)||(50022881-50023005)
chr4 (35-147)||(50029999-50030123)
chr4 (39-147)||(44679415-44679536)
chr4 (19-144)||(11083325-11083462)
chr4 (88-147)||(3184584-3184643)
chr4 (88-147)||(3185270-3185329)
chr4 (84-146)||(31422316-31422378)
chr4 (84-146)||(41798388-41798450)
chr4 (211-318)||(46436401-46436509)
chr4 (84-146)||(6181183-6181245)
chr4 (212-328)||(11083825-11083943)
chr4 (84-146)||(49165651-49165713)
chr4 (87-143)||(9892662-9892718)
chr4 (1-54)||(3184732-3184785)
chr4 (1-54)||(3185139-3185192)
chr4 (25-147)||(41932952-41933086)
chr4 (211-318)||(14315531-14315639)
chr4 (84-143)||(49091041-49091100)
chr4 (1-54)||(44679339-44679392)
chr4 (211-318)||(14297282-14297390)
chr4 (1-54)||(9892532-9892585)
chr4 (40-100)||(41798327-41798392)
[»] chr1 (15 HSPs)
chr1 (1-147)||(50343273-50343431)
chr1 (1-147)||(38126786-38126944)
chr1 (1-143)||(47656484-47656637)
chr1 (1-147)||(2424655-2424813)
chr1 (73-146)||(26876275-26876348)
chr1 (50-144)||(21141641-21141747)
chr1 (84-144)||(19156635-19156695)
chr1 (88-147)||(97334-97393)
chr1 (88-147)||(22524744-22524803)
chr1 (84-146)||(2365854-2365916)
chr1 (84-146)||(3731774-3731836)
chr1 (84-146)||(13639416-13639478)
chr1 (1-54)||(97203-97256)
chr1 (1-54)||(2365990-2366043)
chr1 (1-40)||(22524818-22524857)
[»] scaffold0238 (3 HSPs)
scaffold0238 (3-147)||(18239-18395)
scaffold0238 (182-291)||(18712-18821)
scaffold0238 (340-389)||(18851-18900)
[»] chr2 (15 HSPs)
chr2 (182-389)||(25515588-25515796)
chr2 (35-147)||(36655688-36655812)
chr2 (35-149)||(45284770-45284896)
chr2 (35-149)||(45292133-45292259)
chr2 (39-147)||(10828350-10828471)
chr2 (39-145)||(29400944-29401063)
chr2 (8-137)||(25515163-25515304)
chr2 (84-146)||(5352583-5352645)
chr2 (84-146)||(30496340-30496402)
chr2 (84-143)||(3940122-3940181)
chr2 (84-143)||(43979140-43979199)
chr2 (84-146)||(15831746-15831808)
chr2 (1-54)||(29400879-29400932)
chr2 (84-142)||(43539131-43539189)
chr2 (40-100)||(43539070-43539135)
[»] chr3 (23 HSPs)
chr3 (1-147)||(20351239-20351396)
chr3 (1-147)||(597369-597527)
chr3 (35-147)||(41612978-41613102)
chr3 (35-147)||(17567401-17567525)
chr3 (88-146)||(2274301-2274359)
chr3 (39-147)||(16611688-16611809)
chr3 (39-147)||(22047444-22047565)
chr3 (96-146)||(52390801-52390851)
chr3 (84-146)||(29009477-29009539)
chr3 (96-146)||(36128054-36128104)
chr3 (84-146)||(42903583-42903645)
chr3 (84-146)||(46701418-46701480)
chr3 (84-143)||(34045996-34046055)
chr3 (84-143)||(46389582-46389641)
chr3 (84-143)||(49143856-49143915)
chr3 (84-143)||(54386744-54386803)
chr3 (84-146)||(50480200-50480262)
chr3 (1-54)||(36128201-36128254)
chr3 (1-54)||(36128336-36128389)
chr3 (1-54)||(52390651-52390704)
chr3 (2-54)||(16611821-16611873)
chr3 (2-54)||(22047380-22047432)
chr3 (39-90)||(36128272-36128324)
[»] chr6 (12 HSPs)
chr6 (1-98)||(24722564-24722661)
chr6 (182-327)||(24722077-24722222)
chr6 (88-147)||(3501797-3501856)
chr6 (88-147)||(26423625-26423684)
chr6 (84-146)||(27617333-27617395)
chr6 (84-146)||(11688733-11688795)
chr6 (84-146)||(22301798-22301860)
chr6 (84-146)||(30829045-30829107)
chr6 (84-143)||(6201769-6201828)
chr6 (210-318)||(3380930-3381039)
chr6 (1-54)||(3501934-3501987)
chr6 (39-98)||(3501858-3501922)
[»] chr5 (11 HSPs)
chr5 (35-147)||(5197584-5197708)
chr5 (84-146)||(27673046-27673108)
chr5 (84-146)||(19040510-19040572)
chr5 (84-146)||(30705718-30705780)
chr5 (210-310)||(17658487-17658588)
chr5 (211-318)||(40624732-40624840)
chr5 (1-54)||(27672919-27672972)
chr5 (1-54)||(30705854-30705907)
chr5 (211-318)||(8702032-8702140)
chr5 (39-100)||(27672984-27673050)
chr5 (40-100)||(19040449-19040514)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 182 - 389
Target Start/End: Original strand, 556425 - 556633
Alignment:
Q  182 aaccacatgaaaactactcaannnnnnnaaaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggag 281  Q
    |||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||| |||||||||||| | || |||||||||||||    
T  556425 aaccacatgaaaactactcaatttttttaaaaaacttaacctaaacaaactaacattaacattacattgattaatgctacttacctgtgataatgtggag 556524  T
Q  282 atgattgcttacaaatcgtgaaaatggaaattggagaaatttgaga-aaggtttgtacattttgagcaatgaagaaattggaaaaatgatgtttctgttt 380  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||  |||||||||||||||||||||||||  ||||||||||||||    
T  556525 atgattgcttgcaaatcgtgaaaatggaaattggagaaatttgagagaagtttggtagtttttgagcaatgaagaaattggaaagttgatgtttctgttt 556624  T
Q  381 ctgcctatg 389  Q
    |||||||||    
T  556625 ctgcctatg 556633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 16677820 - 16677721
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacacatt 100  Q
    ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16677820 ccactttatcaaacacactaaacctaaacataacccaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacacatt 16677721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 17652056 - 17651957
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacacatt 100  Q
    ||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17652056 ccactttatcaaacacactaaacctaaacataacccaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacacatt 17651957  T

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Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 5540878 - 5541002
Alignment:
Q  35 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacat------------tatcatacacattcaaacgtaaataatcaaatgca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||| ||||||||||| ||||||||||||||||    
T  5540878 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcacacacactatcattcacattcaaacataaataatcaaatgca 5540977  T
Q  123 ttatcatacacattcaacctaaaca 147  Q
    |||||||| ||||||||| ||||||    
T  5540978 ttatcataaacattcaacataaaca 5541002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 46739848 - 46739969
Alignment:
Q  39 actttcacattcaaccactttatcaaa-taaacacattgaacctaaacattatcataca------------cattcaaacgtaaataatcaaatgcatta 125  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||    
T  46739848 actttcacattcaaccacttgaccaaaataaacacattgaacctaaacattatcatacatactatcattcacattcaaacgtaaataatcaaatgcatta 46739947  T
Q  126 tcatacacattcaacctaaaca 147  Q
    ||||||||||||||||||||||    
T  46739948 tcatacacattcaacctaaaca 46739969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 86 - 147
Target Start/End: Complemental strand, 16675589 - 16675528
Alignment:
Q  86 attatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16675589 attatcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 16675528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 16675460 - 16675400
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaa 144  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16675460 acattatcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaa 16675400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 17649826 - 17649768
Alignment:
Q  86 attatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaa 144  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17649826 attatcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaa 17649768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 45257655 - 45257605
Alignment:
Q  96 acattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45257655 acattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 45257605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 17462687 - 17462749
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  17462687 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 17462749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 17590527 - 17590465
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  17590527 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 17590465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 35609809 - 35609871
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  35609809 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 35609871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 41881170 - 41881108
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  41881170 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 41881108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 9370783 - 9370842
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  9370783 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaaccta 9370842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 48404037 - 48403978
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  48404037 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaaccta 48403978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 45257792 - 45257741
Alignment:
Q  3 actttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||| ||||||||| |||||||||  |||||||||||||||||||    
T  45257792 actttatcaaaaacactaaacctaaacataacttaaactttcacattcaacc 45257741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 318
Target Start/End: Original strand, 14689866 - 14689974
Alignment:
Q  211 aaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagatgattg-cttacaaatcgtgaaaatgga 309  Q
    |||||||||||||||||||  |||||||| |||| || | ||||||| |||| |  | ||||||||||  ||||| || ||| ||| |||||||||||||    
T  14689866 aaaaacttaacctaaacaaattaacattaccattgcaatgattaatggtacttacttgtgataatgtgaggatgaatgtcttgcaattcgtgaaaatgga 14689965  T
Q  310 aattggaga 318  Q
    | |||||||    
T  14689966 atttggaga 14689974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 308
Target Start/End: Original strand, 17741274 - 17741364
Alignment:
Q  219 aacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagatgatt-gcttacaaatcgtgaaaatgg 308  Q
    ||||||||||| |||||||||| |||||| | | |||||||||| |  | ||||||||||| ||||||| ||||  || ||||||||||||    
T  17741274 aacctaaacaaactaacattaagattacaatgactaatgctacttacttttgataatgtggggatgattggcttgtaattcgtgaaaatgg 17741364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 182 - 389
Target Start/End: Complemental strand, 35551959 - 35551751
Alignment:
Q  182 aaccacatgaaaactactcaannnnnnnaaaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggag 281  Q
    |||||||||||||||||||||       |||||||||||||||||||| |||||||||||||| |||| |||||||||||| |  | |||||||||||||    
T  35551959 aaccacatgaaaactactcaattttttaaaaaaacttaacctaaacaaactaacattaacattgcattgattaatgctacttacatgtgataatgtggag 35551860  T
Q  282 atgattgcttacaaatcgtgaaaatggaaattggagaaatttgagaaaggttt-gtacattttgagcaatgaagaaattggaaaaatgatgtttctgttt 380  Q
    |||||||||| |||||| |||||||||||||||||| ||||||||||| |||| |||  |||||||||||||||||| || |||| |||||||| |||||    
T  35551859 atgattgcttgcaaatcttgaaaatggaaattggaggaatttgagaaaagtttggtagtttttgagcaatgaagaaactgaaaaattgatgtttatgttt 35551760  T
Q  381 ctgcctatg 389  Q
    |||||||||    
T  35551759 ctgcctatg 35551751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 35552434 - 35552276
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------ 94  Q
    ||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||          
T  35552434 ccactttatcaaacacactaaacataaacataacttaaactttcacattcaaccactttatcatataaacacattgaacctaaacattatcatacacact 35552335  T
Q  95 ------cacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
          ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  35552334 atcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaatctaaaca 35552276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 20858054 - 20857896
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcataca---- 96  Q
    ||||||||||||||||||||||| |||| ||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||        
T  20858054 ccactttatcaaacacactaaacctaaatataacataaactttcacattcaaccactttatcaaataaacacatttaacctaaacattatcatacacact 20857955  T
Q  97 --------cattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
            |||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  20857954 atcattttcatttaaacttaaataatcaaatgcattatcatacacattcaacctaaaca 20857896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 39491310 - 39491192
Alignment:
Q  272 taatgtggagatgattgcttacaaatcgtgaaaatggaaattggagaaatttgaga-aaggtttgtacattttgagcaatgaagaaattggaaaaatgat 370  Q
    |||||||||||||||||||| || |||||||||||| ||||||||| ||||||||| ||| || |||  ||||||||||||||||||  | |||| ||||    
T  39491310 taatgtggagatgattgcttgcagatcgtgaaaatgaaaattggaggaatttgagagaagtttggtagtttttgagcaatgaagaaaccgtaaaattgat 39491211  T
Q  371 gtttctgtttctgcctatg 389  Q
    |||||||||||||||||||    
T  39491210 gtttctgtttctgcctatg 39491192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 45128014 - 45127900
Alignment:
Q  210 aaaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagatgattgcttacaaatcgtgaaaatgga 309  Q
    |||||||||||||||||||| |||||||||| |||| ||| |||||||||||| |  | |||||||||||||||||||| || |||||| ||||||| ||    
T  45128014 aaaaaacttaacctaaacaaactaacattaagattaaattgattaatgctacttacttgtgataatgtggagatgattggttgcaaatcatgaaaataga 45127915  T
Q  310 aattggagaaatttg 324  Q
    |||| ||| ||||||    
T  45127914 aatttgaggaatttg 45127900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 5677804 - 5677680
Alignment:
Q  35 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacaca------------ttcaaacgtaaataatcaaatgca 122  Q
    ||||||||||| ||||||||||||||||||| |  |||||| |||||||||||||||| |||||            ||||||||||||||||||||| ||    
T  5677804 ctaaactttcaaattcaaccactttatcaaacattcacattcaacctaaacattatcaaacacactatcattcacattcaaacgtaaataatcaaatcca 5677705  T
Q  123 ttatcatacacattcaacctaaaca 147  Q
    |||||||| ||||||||||||||||    
T  5677704 ttatcatatacattcaacctaaaca 5677680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 45128510 - 45128359
Alignment:
Q  8 atcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacac---------- 97  Q
    |||||| ||| ||||| ||||||||| ||||||||||||||||||||| ||||||||| |  ||||   |||||||||||||||| ||||              
T  45128510 atcaaaaacattaaacataaacataacctaaactttcacattcaaccaatttatcaaacattcacaagcaacctaaacattatcaaacacactaccattc 45128411  T
Q  98 --attcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
      ||| ||||||||||||||||| ||||||||||||||||||||| ||||||    
T  45128410 aaattgaaacgtaaataatcaaacgcattatcatacacattcaacataaaca 45128359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 1053204 - 1053142
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  1053204 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 1053142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 23021714 - 23021776
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  23021714 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 23021776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 24920 - 24979
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  24920 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaaccta 24979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 26660126 - 26660067
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  26660126 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaaccta 26660067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 34369968 - 34370022
Alignment:
Q  95 cacattcaaacgtaaataatcaaatgcattatcat--acacattcaacctaaaca 147  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  34369968 cacattcaaacgtaaataatcaaatgcattatcatacacacattcaacctaaaca 34370022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 34371285 - 34371339
Alignment:
Q  95 cacattcaaacgtaaataatcaaatgcattatcat--acacattcaacctaaaca 147  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  34371285 cacattcaaacgtaaataatcaaatgcattatcatacacacattcaacctaaaca 34371339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34369819 - 34369872
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  34369819 ccactttatcaaaaacactaaacctaaacataacctaaactttcacattcaacc 34369872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34371147 - 34371200
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  34371147 ccactttatcaaaaacactaaacctaaacataacctaaactttcacattcaacc 34371200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 317
Target Start/End: Complemental strand, 22495113 - 22495064
Alignment:
Q  269 tgataatgtggagatgattgc-ttacaaatcgtgaaaatggaaattggag 317  Q
    ||||||||||||||||||||  || ||||||||||||| |||||||||||    
T  22495113 tgataatgtggagatgattgagttgcaaatcgtgaaaacggaaattggag 22495064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 110; Significance: 3e-55; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 184 - 389
Target Start/End: Original strand, 41933404 - 41933610
Alignment:
Q  184 ccacatgaaaactactcaannnnnnnaaaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagat 283  Q
    ||||||| |||||||||||       |||||||||||||||||||| |||||||||| |||||||| |||||| ||||| |  | |||||||||||||||    
T  41933404 ccacatgcaaactactcaattttttaaaaaaacttaacctaaacaaactaacattaagattacattgattaattctacttacttgtgataatgtggagat 41933503  T
Q  284 gattgcttacaaatcgtgaaaatggaaattggagaaatttgaga-aaggtttgtacattttgagcaatgaagaaattggaaaaatgatgtttctgtttct 382  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||| ||| || |||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  41933504 gattgcttgcaaatcgtgaaaatgaaaattggaggaatttgagagaagtttagtactttttgagcaatgaagaaactggaaaattgatgtttctgtttct 41933603  T
Q  383 gcctatg 389  Q
    |||||||    
T  41933604 gcctatg 41933610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 30704792 - 30704634
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------ 94  Q
    |||||||||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||          
T  30704792 ccactttatcaaactcagtaaacctaaacataacctaaactttcacattcaaccactttatcaaacaaacacattgaacctaaacattatcatacacact 30704693  T
Q  95 ------cacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30704692 atcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 30704634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 50194247 - 50194089
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------ 94  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||          
T  50194247 ccactttatcaaacacactaaacttaaacataacctaaactttcacattcaaccactttatgaaataaacacatttaacctaaacattatcatacacact 50194148  T
Q  95 ------cacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
          ||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  50194147 atcattcacattcaaacataaattatcaaatgcattatcatacacattcaacctaaaca 50194089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 50022881 - 50023005
Alignment:
Q  35 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------------cacattcaaacgtaaataatcaaatgca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||    
T  50022881 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacacactatcattcacattcaaacgtaaataatcaaatgca 50022980  T
Q  123 ttatcatacacattcaacctaaaca 147  Q
    |||||||||||||||||||||||||    
T  50022981 ttatcatacacattcaacctaaaca 50023005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 50029999 - 50030123
Alignment:
Q  35 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------------cacattcaaacgtaaataatcaaatgca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||    
T  50029999 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacacactatcattcacattcaaacgtaaataatcaaatgca 50030098  T
Q  123 ttatcatacacattcaacctaaaca 147  Q
    |||||||||||||||||||||||||    
T  50030099 ttatcatacacattcaacctaaaca 50030123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 44679415 - 44679536
Alignment:
Q  39 actttcacattcaaccactttatcaaa-taaacacattgaacctaaacattatcatacaca------------ttcaaacgtaaataatcaaatgcatta 125  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  44679415 actttcacattcaaccacttgaccaaaataaacacattgaacctaaacattatcatacacactatcattcacattcaaacgtaaataatcaaatgcatta 44679514  T
Q  126 tcatacacattcaacctaaaca 147  Q
    ||||||||||||||||||||||    
T  44679515 tcatacacattcaacctaaaca 44679536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 11083325 - 11083462
Alignment:
Q  19 taaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcataca------------cattcaaacg 106  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||||||| |  |||||| ||||||||||||||||||||            ||||||||||    
T  11083325 taaacctaaacataacctaaactttaacattcaaccactttatcaaacattcacattaaacctaaacattatcatacacactatcattcgcattcaaacg 11083424  T
Q  107 taaataatcaaatgcattatcatacacattcaacctaa 144  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  11083425 taaataatcaaacacattatcatacacattcaacctaa 11083462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 3184643 - 3184584
Alignment:
Q  88 tatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3184643 tatcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 3184584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 3185270 - 3185329
Alignment:
Q  88 tatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3185270 tatcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 3185329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 31422378 - 31422316
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31422378 acattatcattaacattcaaacgtaaaaaatcaaatgcattatcatacacattcaacctaaac 31422316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 41798388 - 41798450
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41798388 acattatcattaacattcaaacgtaaaaaatcaaatgcattatcatacacattcaacctaaac 41798450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 46436509 - 46436401
Alignment:
Q  211 aaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagatgatt-gcttacaaatcgtgaaaatgga 309  Q
    ||||||||||||||||||| |||||||||||||| || | ||||||| |||| |  | ||||||||||| ||||||| |||| ||| |||||||||||||    
T  46436509 aaaaacttaacctaaacaaactaacattaacattgcaatgattaatggtacttacttgtgataatgtggggatgattggcttgcaattcgtgaaaatgga 46436410  T
Q  310 aattggaga 318  Q
    | |||||||    
T  46436409 atttggaga 46436401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 6181183 - 6181245
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  6181183 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 6181245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 328
Target Start/End: Original strand, 11083825 - 11083943
Alignment:
Q  212 aaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagatgatt-gcttacaaatcgtgaaaatggaa 310  Q
    |||||||||||||||||| |||||||||| ||| || | ||||||| |||| |  | ||||||||||| ||||||| |||| ||| ||||||||||||||    
T  11083825 aaaacttaacctaaacaaactaacattaagattgcaatgattaatggtacttacttgtgataatgtggggatgattggcttgcaattcgtgaaaatggaa 11083924  T
Q  311 attggaga-aatttgagaa 328  Q
     ||||||| ||||||||||    
T  11083925 tttggagagaatttgagaa 11083943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 49165713 - 49165651
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  49165713 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 49165651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 9892662 - 9892718
Alignment:
Q  87 ttatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    |||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9892662 ttatcattaacattcaaacgtaaaaaatcaaatgcattatcatacacattcaaccta 9892718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3184785 - 3184732
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  3184785 ccactttatcaaaaacactaaacctaaacataacctaaactttcacattcaacc 3184732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3185139 - 3185192
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  3185139 ccactttatcaaaaacactaaacctaaacataacctaaactttcacattcaacc 3185192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 147
Target Start/End: Original strand, 41932952 - 41933086
Alignment:
Q  25 taaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacaca------------ttcaaacgtaaata 112  Q
    |||||||||  |||||||||| ||||||||| ||||||||| |  |||| | |||||||||||||||| |||||            |||||| |||||||    
T  41932952 taaacataacataaactttcagattcaaccaatttatcaaacattcacaatcaacctaaacattatcaaacacactaccattcaaattcaaatgtaaata 41933051  T
Q  113 atcaaatgcattatcatacacattcaacctaaaca 147  Q
    ||||||  |||||||||||||||||||||||||||    
T  41933052 atcaaacacattatcatacacattcaacctaaaca 41933086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 14315639 - 14315531
Alignment:
Q  211 aaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagatgatt-gcttacaaatcgtgaaaatgga 309  Q
    ||||||||||||||||||| |||||||||| ||| || | ||||||| |||| |  |  |||||||||| ||||||| |||| ||| |||||||||||||    
T  14315639 aaaaacttaacctaaacaaactaacattaagattgcaatgattaatggtacttacttgggataatgtggggatgattggcttgcaattcgtgaaaatgga 14315540  T
Q  310 aattggaga 318  Q
    | |||||||    
T  14315539 atttggaga 14315531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 49091100 - 49091041
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||| ||||||||||||    
T  49091100 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatatacattcaaccta 49091041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 44679339 - 44679392
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| |||||||||  ||||||||||||||| |||||||||||||    
T  44679339 ccactttatcaaaaacactaaacccaaacataatctaaaccttcacattcaacc 44679392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 14297390 - 14297282
Alignment:
Q  211 aaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagatgatt-gcttacaaatcgtgaaaatgga 309  Q
    ||||||||||||||||||| |||||||||| ||| || | ||||||| |||| |  |  |||||||||| ||||||| |||| ||| ||||||| |||||    
T  14297390 aaaaacttaacctaaacaaactaacattaagattgcaatgattaatggtacttacttgggataatgtggggatgattggcttgcaattcgtgaacatgga 14297291  T
Q  310 aattggaga 318  Q
    | |||||||    
T  14297290 atttggaga 14297282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 9892532 - 9892585
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| |||||| || ||| ||||||||||||||||    
T  9892532 ccactttatcaaaaacactaaacctaaacaaaacctagactttcacattcaacc 9892585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 41798327 - 41798392
Alignment:
Q  40 ctttcacattcaaccactttatcaaa-taaacacattga----acctaaacattatcatacacatt 100  Q
    |||||||||| |||||||||| |||| |||| |||||||    |||||||||||||||||||||||    
T  41798327 ctttcacattaaaccactttaccaaaataaagacattgattaaacctaaacattatcatacacatt 41798392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 50343273 - 50343431
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------ 94  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  50343273 ccactttgtcaaacacactaaacctaaacataacctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacacact 50343372  T
Q  95 ------cacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
          ||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  50343373 atcattcacattcaaacataaataatcaaatgcattatcatacacactcaacctaaaca 50343431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 38126786 - 38126944
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------ 94  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||          
T  38126786 ccactttatcaaacacattaaacctaaacataacctaaactttcacattcaaccactttatcaaaaaaacacattgaacctaaacattatcatacacact 38126885  T
Q  95 ------cacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
          ||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  38126886 atcattcacattcaaacataaataatcaaatgcaatatcatacacattcaacctaaaca 38126944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 47656637 - 47656484
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------ 94  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  47656637 ccactttgtcaaacacactaaacctaaacataacctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacacact 47656538  T
Q  95 ------cacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
          ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  47656537 atcattcacattcaaacgtaaataatc-aatgcattatcatacacattcaaccta 47656484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 2424655 - 2424813
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------ 94  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||| |||| | |||||||||||||||||||||||||          
T  2424655 ccactttatcaaacacactaaacctaaacataacctaaactttcaaattcaaccattttattaaattagcacattgaacctaaacattatcatacacact 2424754  T
Q  95 ------cacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
          ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2424755 atcattcacattcaaacataaataatcaaatgcattatcatacacattcaacctaaaca 2424813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 26876348 - 26876275
Alignment:
Q  73 attgaacctaaacattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    |||||||||||||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  26876348 attgaacctaaacattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 26876275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 21141747 - 21141641
Alignment:
Q  50 caaccactttatcaaataaacacattgaacctaaacattatcatacaca------------ttcaaacgtaaataatcaaatgcattatcatacacattc 137  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||            ||||||| ||||||||||||||||||||||| |||||||    
T  21141747 caaccactttatcaaataaacacattgaacttaaacattatcatacacactatcattcacattcaaacataaataatcaaatgcattatcatgcacattc 21141648  T
Q  138 aacctaa 144  Q
    |||||||    
T  21141647 aacctaa 21141641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 19156695 - 19156635
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaa 144  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19156695 acattatcattaacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaa 19156635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 97334 - 97393
Alignment:
Q  88 tatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  97334 tatcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaaccaaaaca 97393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 22524803 - 22524744
Alignment:
Q  88 tatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  22524803 tatcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaatctaaaca 22524744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 2365916 - 2365854
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2365916 acattatcattaacattcaaacgtaaaaaatcaaatgcattatcatacacattcaacctaaac 2365854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 3731774 - 3731836
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  3731774 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 3731836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 13639416 - 13639478
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  13639416 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 13639478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 97203 - 97256
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  97203 ccactttatcaaaaacactaaacctaaacataacctaaactttcacattcaacc 97256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2366043 - 2365990
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| |||||| || ||| ||||||||||||||||    
T  2366043 ccactttatcaaaaacactaaacctaaacaaaacctagactttcacattcaacc 2365990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 22524857 - 22524818
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaac 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  22524857 ccactttatcaaacacactaaacctaaacataacctaaac 22524818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 3 - 147
Target Start/End: Original strand, 18239 - 18395
Alignment:
Q  3 actttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata-------- 94  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||            
T  18239 actttatcaaacacactaaacctaaacataacccaaactttcacattcaaccactttatcaaataaacacattaaacctaaacattatcatacacactat 18338  T
Q  95 ----cacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
        |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18339 cattcacattaaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 18395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 291
Target Start/End: Original strand, 18712 - 18821
Alignment:
Q  182 aaccacatgaaaactactcaannnnnnnaaaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggag 281  Q
    |||||||||||||||||||||       |||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |  |||||||||||||    
T  18712 aaccacatgaaaactactcaatttttttaaaaaacttaacctaaacaaactaacattaacattacattgattaatgctacttaccagtgataatgtggag 18811  T
Q  282 atgattgctt 291  Q
    ||||||||||    
T  18812 atgattgctt 18821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 18851 - 18900
Alignment:
Q  340 ttttgagcaatgaagaaattggaaaaatgatgtttctgtttctgcctatg 389  Q
    |||||||||||||||||| ||||||| ||||||||  |||||| ||||||    
T  18851 ttttgagcaatgaagaaactggaaaattgatgtttaggtttcttcctatg 18900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 6e-47; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 182 - 389
Target Start/End: Original strand, 25515588 - 25515796
Alignment:
Q  182 aaccacatgaaaactactcaannnnnnnaaaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggag 281  Q
    ||||||||| |||||||||||       ||||||||||||| |||||| |||||||||| |||||||| ||||||| |||| |  | |||||||||||||    
T  25515588 aaccacatgcaaactactcaattttttaaaaaaacttaacccaaacaaactaacattaagattacattgattaatgttacttacttgtgataatgtggag 25515687  T
Q  282 atgattgcttacaaatcgtgaaaatggaaattggagaaatttgaga-aaggtttgtacattttgagcaatgaagaaattggaaaaatgatgtttctgttt 380  Q
    |||||||||| |||||| |||||||| ||||||||| ||||||||| ||| || |||  |||||||| ||||||||| ||||||| ||||||||||||||    
T  25515688 atgattgcttgcaaatcatgaaaatgaaaattggaggaatttgagagaagtttggtagtttttgagcgatgaagaaactggaaaactgatgtttctgttt 25515787  T
Q  381 ctgcctatg 389  Q
    |||||||||    
T  25515788 ctgcctatg 25515796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 36655688 - 36655812
Alignment:
Q  35 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------------cacattcaaacgtaaataatcaaatgca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||| ||||||||||||||||    
T  36655688 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacacactatcattcacattcaaacataaataatcaaatgca 36655787  T
Q  123 ttatcatacacattcaacctaaaca 147  Q
    |||||||||||||||||||||||||    
T  36655788 ttatcatacacattcaacctaaaca 36655812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 45284896 - 45284770
Alignment:
Q  35 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacatta------------tcatacacattcaaacgtaaataatcaaatgca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||            |||| ||||||||||||||||||||||||||||    
T  45284896 ctaaactttcacattcaaccactttatcaaataaacacattgaaccttaacattatcatgcacactatcattcacattcaaacgtaaataatcaaatgca 45284797  T
Q  123 ttatcatacacattcaacctaaacaaa 149  Q
    |||||||| ||||||||||||||||||    
T  45284796 ttatcatatacattcaacctaaacaaa 45284770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 35 - 149
Target Start/End: Complemental strand, 45292259 - 45292133
Alignment:
Q  35 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacatta------------tcatacacattcaaacgtaaataatcaaatgca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||            |||| ||||||||||||||||||||||||||||    
T  45292259 ctaaactttcacattcaaccactttatcaaataaacacattgaaccttaacattatcatgcacactatcattcacattcaaacgtaaataatcaaatgca 45292160  T
Q  123 ttatcatacacattcaacctaaacaaa 149  Q
    |||||||| ||||||||||||||||||    
T  45292159 ttatcatatacattcaacctaaacaaa 45292133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 10828350 - 10828471
Alignment:
Q  39 actttcacattcaaccactttatcaaa-taaacacattgaacctaaacattatcataca------------cattcaaacgtaaataatcaaatgcatta 125  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||    
T  10828350 actttcacattcaaccacttgaccaaaataaacacattgaacctaaacattatcatacaaactatcattaacattcaaacgtaaataatcaaatgcatta 10828449  T
Q  126 tcatacacattcaacctaaaca 147  Q
    ||||||||||||||||||||||    
T  10828450 tcatacacattcaacctaaaca 10828471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 39 - 145
Target Start/End: Original strand, 29400944 - 29401063
Alignment:
Q  39 actttcacattcaaccactttatcaaa-taaacacattgaacctaaacattatcatacaca------------ttcaaacgtaaataatcaaatgcatta 125  Q
    |||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  29400944 actttcacattcaaccacttgaccaaaataaacacattgaacctaaacattatcatacacactattattcacattcaaacgtaaataatcaaatgcatta 29401043  T
Q  126 tcatacacattcaacctaaa 145  Q
    ||||||||||||||||||||    
T  29401044 tcatacacattcaacctaaa 29401063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 25515163 - 25515304
Alignment:
Q  8 atcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattat------------catac 95  Q
    |||||| ||| ||||| ||||||||| ||||||||||||||||||||| ||||||||| |  |||| | ||||||||||||||            ||| |    
T  25515163 atcaaaaacattaaacctaaacataacctaaactttcacattcaaccaatttatcaaacattcacaatcaacctaaacattatcaaaaacactaccattc 25515262  T
Q  96 acattcaaacgtaaataatcaaatgcattatcatacacattc 137  Q
    | ||||||||||||||||||||||||||||||||||||||||    
T  25515263 aaattcaaacgtaaataatcaaatgcattatcatacacattc 25515304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 5352645 - 5352583
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  5352645 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 5352583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 30496340 - 30496402
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  30496340 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 30496402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 3940122 - 3940181
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  3940122 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaaccta 3940181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 43979199 - 43979140
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  43979199 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaaccta 43979140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 15831808 - 15831746
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  |||||| |||| ||| |||||||||||||||||||||||||||||||||||    
T  15831808 acattatcattaacattccaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 15831746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29400879 - 29400932
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  29400879 ccactttatcaaaaacactaaacctaaacataacctaaactttcacattcaacc 29400932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 43539131 - 43539189
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacct 142  Q
    ||||||||||  |||||||||||  || |||||||||||||||||||||||||||||||    
T  43539131 acattatcattaacattcaaacgccaaaaatcaaatgcattatcatacacattcaacct 43539189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 43539070 - 43539135
Alignment:
Q  40 ctttcacattcaaccactttatcaaa-taaacacattga----acctaaacattatcatacacatt 100  Q
    |||||||||| |||||||||| |||| |||| |||||||    |||||||||||||||||||||||    
T  43539070 ctttcacatttaaccactttaccaaaataaagacattgattggacctaaacattatcatacacatt 43539135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 9e-46; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 20351396 - 20351239
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------ 94  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  20351396 ccactttatcaaacacactaaacctaaatataacctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatatacact 20351297  T
Q  95 ------cacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
          ||||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  20351296 atcattcacattcaaacgtaaat-atcaaatgcattatcatacacattctacctaaaca 20351239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 597527 - 597369
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------ 94  Q
    |||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||          
T  597527 ccactttatcaagcacactaaacctaaacataacctaaactttcacattcaaccactttattaaattagcacattgaacctaaacattatcatacacact 597428  T
Q  95 ------cacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
          ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  597427 atcattcacattcaaacataaataatcaaatgcattatcatacacattcaacctaaaca 597369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 41613102 - 41612978
Alignment:
Q  35 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------------cacattcaaacgtaaataatcaaatgca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||| ||||||||||||||||    
T  41613102 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacacaccatcattcacattcaaacataaataatcaaatgca 41613003  T
Q  123 ttatcatacacattcaacctaaaca 147  Q
    |||||||||||||||||||||||||    
T  41613002 ttatcatacacattcaacctaaaca 41612978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 17567401 - 17567525
Alignment:
Q  35 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacac------------attcaaacgtaaataatcaaatgca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||            |||||||| |||||||| |||||||    
T  17567401 ctaaactttcacattcaaccactttatcaaataaacacattgaacataaacattatcatacacactatcattcatattcaaacataaataattaaatgca 17567500  T
Q  123 ttatcatacacattcaacctaaaca 147  Q
    |||||||||||||||||| ||||||    
T  17567501 ttatcatacacattcaacataaaca 17567525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 146
Target Start/End: Original strand, 2274301 - 2274359
Alignment:
Q  88 tatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2274301 tatcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 2274359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 147
Target Start/End: Complemental strand, 16611809 - 16611688
Alignment:
Q  39 actttcacattcaaccactttatcaaa-taaacacattgaacctaaacattatcatacaca------------ttcaaacgtaaataatcaaatgcatta 125  Q
    |||||||||||||||||||| | |||| ||||||| |||||||||||||||| ||||||||            |||||||||||||||||||||||||||    
T  16611809 actttcacattcaaccacttgaccaaaataaacacgttgaacctaaacattaacatacacactatcattcacattcaaacgtaaataatcaaatgcatta 16611710  T
Q  126 tcatacacattcaacctaaaca 147  Q
    |||| |||||||||||||||||    
T  16611709 tcatgcacattcaacctaaaca 16611688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 22047444 - 22047565
Alignment:
Q  39 actttcacattcaaccactttatcaaa-taaacacattgaacctaaacattatcatacaca------------ttcaaacgtaaataatcaaatgcatta 125  Q
    |||||||||||||||||||| | |||| ||||||| |||||||||||||||| ||||||||            |||||||||||||||||||||||||||    
T  22047444 actttcacattcaaccacttgaccaaaataaacacgttgaacctaaacattaacatacacactatcattcacattcaaacgtaaataatcaaatgcatta 22047543  T
Q  126 tcatacacattcaacctaaaca 147  Q
    |||| |||||||||||||||||    
T  22047544 tcatgcacattcaacctaaaca 22047565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 52390801 - 52390851
Alignment:
Q  96 acattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52390801 acattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 52390851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 29009539 - 29009477
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  29009539 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 29009477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 36128104 - 36128054
Alignment:
Q  96 acattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36128104 acattaaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 36128054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 42903583 - 42903645
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  42903583 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 42903645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 46701418 - 46701480
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  46701418 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 46701480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 34046055 - 34045996
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  34046055 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaaccta 34045996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 46389641 - 46389582
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  46389641 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaaccta 46389582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 49143856 - 49143915
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  49143856 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaaccta 49143915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 54386803 - 54386744
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  54386803 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaaccta 54386744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 50480200 - 50480262
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  50480200 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacttaaac 50480262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36128254 - 36128201
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  36128254 ccactttatcaaaaacactaaacctaaacataacctaaactttcacattcaacc 36128201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 36128389 - 36128336
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  36128389 ccactttatcaaaaacactaaacctaaacataacctaaactttcacattcaacc 36128336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 52390651 - 52390704
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  52390651 ccactttatcaaaaacactaaacttaaacataacctaaactttcacattcaacc 52390704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 16611873 - 16611821
Alignment:
Q  2 cactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  16611873 cactttatcaaaaacactaaacttaaacataacctaaactttcacattcaacc 16611821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 22047380 - 22047432
Alignment:
Q  2 cactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    |||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  22047380 cactttatcaaaaacactaaacttaaacataacctaaactttcacattcaacc 22047432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 36128324 - 36128272
Alignment:
Q  39 actttcacattcaaccacttta-tcaaataaacacattgaacctaaacattat 90  Q
    |||||||||||||||||| | | | |||||||||||||||| |||||||||||    
T  36128324 actttcacattcaaccacatgactaaaataaacacattgaagctaaacattat 36128272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 24722661 - 24722564
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcatacaca 98  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24722661 ccactttatcaaacacactaaacctaaacataacctaaactttcacatttaaccactttatcaaataaacacattgaacctaaacattatcatacaca 24722564  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 182 - 327
Target Start/End: Complemental strand, 24722222 - 24722077
Alignment:
Q  182 aaccacatgaaaactactcaannnnnnnaaaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggag 281  Q
    |||||||||||||||||||||        ||||||||||| ||||||| ||||||||||||||||||| |||||||||| | | || || ||||||||||    
T  24722222 aaccacatgaaaactactcaattttttttaaaaacttaacataaacaaactaacattaacattacattgattaatgctatttacctgtggtaatgtggag 24722123  T
Q  282 atgattgcttacaaatcgtgaaaatggaaattggagaaatttgaga 327  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||    
T  24722122 atgattgcttgcaaatcgtgaaaatggaaattggaggaatttgaga 24722077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 3501856 - 3501797
Alignment:
Q  88 tatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3501856 tatcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaaccaaaaca 3501797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 26423684 - 26423625
Alignment:
Q  88 tatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaaca 147  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26423684 tatcattcacattcaaacgtaaataatcaaatgcattatcatacacattcaacccaaaca 26423625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 27617395 - 27617333
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27617395 acattatcattaacattcaaacgtaaaaaatcaaatgcattatcatacacattcaacctaaac 27617333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 11688795 - 11688733
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  11688795 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 11688733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 22301860 - 22301798
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  22301860 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 22301798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 30829045 - 30829107
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  30829045 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaacctaaac 30829107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 6201828 - 6201769
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaaccta 143  Q
    ||||||||||  ||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  6201828 acattatcattaacattcaaacgcaaaaaatcaaatgcattatcatacacattcaaccta 6201769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 318
Target Start/End: Complemental strand, 3381039 - 3380930
Alignment:
Q  210 aaaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagatgatt-gcttacaaatcgtgaaaatgg 308  Q
    ||||||||||||||||||||  ||||||||| ||| || | ||||||| |||| |  | ||||||||||| ||||||| ||||||||  |||||||||||    
T  3381039 aaaaaacttaacctaaacaaattaacattaaaattgcaatgattaatggtacttacttgtgataatgtggggatgattggcttacaatccgtgaaaatgg 3380940  T
Q  309 aaattggaga 318  Q
    || |||||||    
T  3380939 aatttggaga 3380930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3501987 - 3501934
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||    
T  3501987 ccactttatcaaaaacactaaacctaaacataacctaaactttcacattcaacc 3501934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 3501922 - 3501858
Alignment:
Q  39 actttcacattcaaccactttatcaaa-taaacacat----tgaacctaaacattatcatacaca 98  Q
    |||||||||||||||||||| | |||| |||||||||    ||||||||||||||||||||||||    
T  3501922 actttcacattcaaccacttgaccaaaataaacacatagattgaacctaaacattatcatacaca 3501858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 5197708 - 5197584
Alignment:
Q  35 ctaaactttcacattcaaccactttatcaaataaacacattgaacctaaacattatcata------------cacattcaaacgtaaataatcaaatgca 122  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||            ||||||||||| ||||||||||||||||    
T  5197708 ctaaactttcacattcaaccacgttatcaaataaacacattgaacctaaacattatcatacacactatcattcacattcaaacataaataatcaaatgca 5197609  T
Q  123 ttatcatacacattcaacctaaaca 147  Q
    |||||||||||||||||||||||||    
T  5197608 ttatcatacacattcaacctaaaca 5197584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 27673046 - 27673108
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27673046 acattatcattaacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 27673108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 19040510 - 19040572
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19040510 acattatcattaacattcaaacgtaaaaaatcaaatgcattatcatacacattcaacctaaac 19040572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 84 - 146
Target Start/End: Complemental strand, 30705780 - 30705718
Alignment:
Q  84 acattatcatacacattcaaacgtaaataatcaaatgcattatcatacacattcaacctaaac 146  Q
    ||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  30705780 acattatcattaacattcaaacgtaaataatcaaatgcattgtcatacacattcaacctaaac 30705718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 310
Target Start/End: Complemental strand, 17658588 - 17658487
Alignment:
Q  210 aaaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagatgattg-cttacaaatcgtgaaaatgg 308  Q
    ||||||||||||||||||||  ||||||||||||| || | ||||||| |||| | || ||||||||||| |||||||| ||| ||| ||||||||||||    
T  17658588 aaaaaacttaacctaaacaaattaacattaacattgcaatgattaatggtacttacctgtgataatgtggggatgattgtcttgcaattcgtgaaaatgg 17658489  T
Q  309 aa 310  Q
    ||    
T  17658488 aa 17658487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 211 - 318
Target Start/End: Original strand, 40624732 - 40624840
Alignment:
Q  211 aaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagatgatt-gcttacaaatcgtgaaaatgga 309  Q
    ||||||||||||||||||| |||||||||||||| || | || |||| |||| |  | ||||||||||| ||||||| |||| ||| |||||||||||||    
T  40624732 aaaaacttaacctaaacaaactaacattaacattgcaatgatcaatggtacttacttgtgataatgtggggatgattggcttgcaattcgtgaaaatgga 40624831  T
Q  310 aattggaga 318  Q
    | |||||||    
T  40624832 atttggaga 40624840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 27672919 - 27672972
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| |||||| || ||||||||||||||||||||    
T  27672919 ccactttatcaaaaacactaaacctaaacaaaacctaaactttcacattcaacc 27672972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30705907 - 30705854
Alignment:
Q  1 ccactttatcaaacacactaaacgtaaacataatctaaactttcacattcaacc 54  Q
    ||||||||||||| ||||||||| |||||| || ||||||||||||||||||||    
T  30705907 ccactttatcaaaaacactaaacctaaacaaaacctaaactttcacattcaacc 30705854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 318
Target Start/End: Original strand, 8702032 - 8702140
Alignment:
Q  211 aaaaacttaacctaaacaagctaacattaacattacatttattaatgctactcaactatgataatgtggagatgatt-gcttacaaatcgtgaaaatgga 309  Q
    |||||||||||||||||||  ||||||||| ||| || | ||||||  |||| |  | ||||||||||| |||||||  ||| ||| |||||||||||||    
T  8702032 aaaaacttaacctaaacaaattaacattaagattgcaatgattaatagtacttacttgtgataatgtggggatgattaacttgcaattcgtgaaaatgga 8702131  T
Q  310 aattggaga 318  Q
    | |||||||    
T  8702132 atttggaga 8702140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 27672984 - 27673050
Alignment:
Q  39 actttcacattcaaccactttatcaaa-taaacacattga----acctaaacattatcatacacatt 100  Q
    ||||||||||| |||||||||| |||| |||| |||||||    |||||||||||||||||||||||    
T  27672984 actttcacattaaaccactttaccaaaataaagacattgattaaacctaaacattatcatacacatt 27673050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 19040449 - 19040514
Alignment:
Q  40 ctttcacattcaaccactttatcaaa-taaacacattga----acctaaacattatcatacacatt 100  Q
    |||||||||| |||||||||| |||| |||| |||||||    |||||||||||||||||||||||    
T  19040449 ctttcacattaaaccactttaccaaaataaagacattgattaaacctaaacattatcatacacatt 19040514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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