View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9581_high_14 (Length: 229)

Name: NF9581_high_14
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9581_high_14
NF9581_high_14
[»] chr1 (8 HSPs)
chr1 (1-222)||(4016754-4016974)
chr1 (1-220)||(4570790-4571013)
chr1 (1-221)||(21855366-21855586)
chr1 (145-221)||(4014948-4015024)
chr1 (1-220)||(10218846-10219071)
chr1 (4-221)||(4366478-4366695)
chr1 (86-214)||(39379051-39379179)
chr1 (77-118)||(4015057-4015098)
[»] chr5 (2 HSPs)
chr5 (1-221)||(24330882-24331102)
chr5 (145-198)||(18964836-18964889)
[»] chr4 (6 HSPs)
chr4 (77-214)||(3565687-3565824)
chr4 (86-214)||(3560948-3561076)
chr4 (86-214)||(3557678-3557806)
chr4 (8-195)||(1686294-1686481)
chr4 (145-223)||(53430080-53430158)
chr4 (145-199)||(53774851-53774905)
[»] chr7 (22 HSPs)
chr7 (86-222)||(29454085-29454221)
chr7 (86-221)||(29921976-29922111)
chr7 (86-214)||(29867191-29867316)
chr7 (145-205)||(19604462-19604522)
chr7 (145-221)||(660830-660906)
chr7 (145-205)||(18982951-18983011)
chr7 (145-205)||(18997597-18997657)
chr7 (4-118)||(29106678-29106792)
chr7 (4-199)||(29859324-29859519)
chr7 (83-185)||(29445675-29445777)
chr7 (86-199)||(29874462-29874576)
chr7 (145-207)||(29881267-29881329)
chr7 (151-220)||(6864791-6864860)
chr7 (145-221)||(14076689-14076765)
chr7 (145-221)||(14386717-14386793)
chr7 (145-185)||(29899385-29899425)
chr7 (145-204)||(18952905-18952964)
chr7 (4-115)||(29899238-29899349)
chr7 (145-199)||(19597660-19597714)
chr7 (145-199)||(19645635-19645689)
chr7 (145-206)||(29106825-29106886)
chr7 (145-197)||(12819923-12819975)
[»] chr3 (1 HSPs)
chr3 (86-199)||(3625686-3625799)
[»] chr6 (4 HSPs)
chr6 (141-199)||(6921355-6921413)
chr6 (145-220)||(17369675-17369750)
chr6 (145-199)||(6947885-6947939)
chr6 (145-199)||(6954524-6954578)
[»] chr2 (1 HSPs)
chr2 (158-199)||(14514924-14514965)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 4016974 - 4016754
Alignment:
Q  1 tctcttgatttggggacggagacatacaattaatacatggtgcctcgtggttttgataaagggccgctttacgtggcaactattagtgtgttggggggct 100  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  4016974 tctcttgatttggg-acggagacatacaatcaatacatggtgcctcgtggttttgataaagggccgctttacatgccaactattagtgtgttggggggct 4016876  T
Q  101 gcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||     
T  4016875 gcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactcagttgtttaaatttag 4016776  T
Q  201 ttaccatgatcttctaatagac 222  Q
    ||||||||||||||||||||||    
T  4016775 ttaccatgatcttctaatagac 4016754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4570790 - 4571013
Alignment:
Q  1 tctcttgatttggggacggagacatacaattaatacatggtgcctcgtggttttgataaagggccgctttacgtggcaactattagtgtgt----tgggg 96  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||  ||||| ||| |||||   ||  | | |||||| ||||||    ||||     
T  4570790 tctcttgatttggagacggagacatacaatcaatacatggtgcctcgtggggttgatgaagtgccgccgaactagcctactattggtgtgtgtgttggga 4570889  T
Q  97 ggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaa 196  Q
    |||||||||||||||||||||||  | ||| ||||  ||||   ||| ||||| |||||||||||||| ||||||||||| |||||||| ||||||||||    
T  4570890 ggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactcaattgcttaaaa 4570989  T
Q  197 ttaattaccatgatcttctaatag 220  Q
    ||| |||   ||||||||||||||    
T  4570990 ttagttatagtgatcttctaatag 4571013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 21855586 - 21855366
Alignment:
Q  1 tctcttgatttggggacggagacatacaattaatacatggtgcctcgtggttttgataaagggccgctttacgtggcaactattagtgtgttggggggct 100  Q
    ||||||||||||| |||||||||||||||| |||||||  |||||| |||||||||| |||  ||||   | | | |||||||| |||| ||| ||||||    
T  21855586 tctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaaagagccaactattggtgtattgaggggct 21855487  T
Q  101 gcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaa 200  Q
    | ||||||||||| ||||| || | | ||||| ||||   ||| ||| |||||||| ||||||| ||||||||||| ||||||||  | |||||| |||     
T  21855486 gtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttag 21855387  T
Q  201 ttaccatgatcttctaataga 221  Q
    ||||||| |||||||||||||    
T  21855386 ttaccataatcttctaataga 21855366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 4015024 - 4014948
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattaccatgatcttctaataga 221  Q
    |||||||||||||||||||| ||||||||||| |||||||| || |||||| ||| |||||||||||||||||||||    
T  4015024 tggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagttaccatgatcttctaataga 4014948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10218846 - 10219071
Alignment:
Q  1 tctcttgatttggggacggagacatacaattaatacatggtgcctcgtggttttgataaagggccgcttt------acgtggcaactattagtgtgttgg 94  Q
    ||||||||||||| |||||||||||||||| |||||||||||||  ||||||||||| ||| | ||| ||      ||    |||||||| |||||||||    
T  10218846 tctcttgatttggagacggagacatacaatcaatacatggtgccctgtggttttgatcaagtgacgcattcgtacaacacaccaactattggtgtgttgg 10218945  T
Q  95 ggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactcagttgcttaa 194  Q
    |||| |||||||||||||||| ||   | | | ||||  ||||   | | ||||| ||||||||||||||  |||||||||| |||||||| || |||||    
T  10218946 ggggttgcctttgtttttcttttttgcacaaggaaactgattttgttgtatggcaaatgaagaaatttgggattgaagattcttggactcaattacttaa 10219045  T
Q  195 aattaattaccatgatcttctaatag 220  Q
    ||||| |||||||  ||||| |||||    
T  10219046 aattagttaccatactcttcgaatag 10219071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 4366695 - 4366478
Alignment:
Q  4 cttgatttggggacggagacatacaattaatacatggtgcctcgtggttttgataaagggccgctttacgtggcaactattagtgtgttggggggctgcc 103  Q
    |||||| |||| || |||||||||||| ||||| || ||||||||||||||||  ||| ||| | |   |   ||||  || |||||||||||| |||||    
T  4366695 cttgatctgggtacagagacatacaatcaatacttgctgcctcgtggttttgaagaagtgccacctactgaaccaacagttggtgtgttgggggactgcc 4366596  T
Q  104 tttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaatta 203  Q
    |||||||||||||||| || | | ||||  ||||   | | ||||||||||||||||| || |||||||| || |||||||  || |||||| ||| |||    
T  4366595 tttgtttttcttattcttacaagaaaactgattttgttttatggcagatgaagaaattcggggttgaagagtcttggactccatttcttaaagttagtta 4366496  T
Q  204 ccatgatcttctaataga 221  Q
    |||  |||||| ||||||    
T  4366495 ccagaatcttcaaataga 4366478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 39379179 - 39379051
Alignment:
Q  86 gtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactca 185  Q
    |||||||||| | ||| ||||||||||||||||  || ||  ||||  ||||   ||| |||||||||||| ||||||| |||||||| || ||||||||    
T  39379179 gtgtgttgggtgactgtctttgtttttcttattgttacagaaaaactgattttattatatggcagatgaaggaatttggggttgaagagtcttggactca 39379080  T
Q  186 gttgcttaaaattaattaccatgatcttc 214  Q
     || |||||||| | ||| ||||||||||    
T  39379079 atttcttaaaatcagttatcatgatcttc 39379051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 4015098 - 4015057
Alignment:
Q  77 caactattagtgtgttggggggctgcctttgtttttcttatt 118  Q
    |||||||| ||||| |||| ||||||||||||||||||||||    
T  4015098 caactattggtgtgctgggaggctgcctttgtttttcttatt 4015057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 24331102 - 24330882
Alignment:
Q  1 tctcttgatttggggacggagacatacaattaatacatggtgcctcgtggttttgataaagggccgctttacgtggcaactattagtgtgttggggggct 100  Q
    ||||||||||||| |||||||||||||||| |||||||  |||||| |||||||||| |||  ||||   | | | |||||||| |||| ||| ||||||    
T  24331102 tctcttgatttggagacggagacatacaatcaatacattatgcctcatggttttgatgaagttccgccgaaagagccaactattggtgtattgaggggct 24331003  T
Q  101 gcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaa 200  Q
    | ||||||||||| ||||| || | | ||||| ||||   ||| ||| |||||||| ||||||| ||||||||||| ||||||||  | |||||| |||     
T  24331002 gtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagattcttggactcaactccttaaagttag 24330903  T
Q  201 ttaccatgatcttctaataga 221  Q
    ||||||| |||||||||||||    
T  24330902 ttaccataatcttctaataga 24330882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 18964889 - 18964836
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaatt 198  Q
    ||||| |||||| |||||||||||||||| || |||||||| || |||||||||    
T  18964889 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaatt 18964836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 3565687 - 3565824
Alignment:
Q  77 caactattagtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattc 176  Q
    ||||| || |||||||| ||| ||||||||||||||||||||  |||| | ||||| ||||   ||| |||||||||||| ||||||| |||||||| ||    
T  3565687 caactgttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagtc 3565786  T
Q  177 ctggactcagttgcttaaaattaattaccatgatcttc 214  Q
     |||||||| || |||||||||| ||| ||||||||||    
T  3565787 ttggactcaatttcttaaaattagttatcatgatcttc 3565824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 3561076 - 3560948
Alignment:
Q  86 gtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactca 185  Q
    |||| |||||||  |||||||||||||||||||| || | | ||||| ||||   ||| ||||||||||| |||||||| |||||||| || ||||||||    
T  3561076 gtgtcttgggggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggactca 3560977  T
Q  186 gttgcttaaaattaattaccatgatcttc 214  Q
     || |||||||||| ||| ||||||||||    
T  3560976 atttcttaaaattagttatcatgatcttc 3560948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 3557678 - 3557806
Alignment:
Q  86 gtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactca 185  Q
    |||||||| ||| ||| ||||||||||||||||| || | | ||||| ||||   ||| ||||| |||||| ||||||| |||||||| || ||||||||    
T  3557678 gtgtgttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggactca 3557777  T
Q  186 gttgcttaaaattaattaccatgatcttc 214  Q
     || |||||||||| ||| ||||||||||    
T  3557778 atttcttaaaattagttatcatgatcttc 3557806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 1686481 - 1686294
Alignment:
Q  8 atttggggacggagacatacaattaatacatggtgcctcgtggttttgataaagggccgctttacgtggcaactattagtgtgttggggggctgcctttg 107  Q
    |||||||||| |||||||||||| ||||   | ||||||  ||||||| | | | |||||||   | | ||||| || |||||||||||| |||||||||    
T  1686481 atttggggactgagacatacaatcaatatcggttgcctcagggttttgctgaggtgccgcttatagagccaactgttggtgtgttgggggactgcctttg 1686382  T
Q  108 tttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaa 195  Q
    |||||||||||| |||| |   |||||| |   ||| |||||||||||| ||||||| ||||| || || |||||||| || ||||||    
T  1686381 tttttcttattcttataagaggaccaatcttattatatggcagatgaaggaatttggcgttgacgagtcttggactcaatttcttaaa 1686294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 223
Target Start/End: Complemental strand, 53430158 - 53430080
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattaccatgatcttctaatagact 223  Q
    |||||||||||||||| ||| |  |||||||| |||||||| || |||||||||| ||||||  |||||| | ||||||    
T  53430158 tggcagatgaagaaatatggggccgaagattcttggactcaattccttaaaattagttaccaacatcttcaagtagact 53430080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 53774851 - 53774905
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaatta 199  Q
    ||||| |||||| |||||||||||||||| || |||||||| || ||||||||||    
T  53774851 tggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaatta 53774905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 222
Target Start/End: Complemental strand, 29454221 - 29454085
Alignment:
Q  86 gtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactca 185  Q
    |||| ||||||||  ||||||||||||||||||| || | | || || ||||   ||| |||| ||||| ||||||||||||||||||||| ||||||||    
T  29454221 gtgttttggggggaagcctttgtttttcttattcttacaaggaacccgattttgttatatggcggatgatgaaatttggagttgaagattcttggactca 29454122  T
Q  186 gttgcttaaaattaattaccatgatcttctaatagac 222  Q
     ||  ||||||||| ||| || ||||||| |||||||    
T  29454121 attctttaaaattagttatcaagatcttcaaatagac 29454085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 86 - 221
Target Start/End: Complemental strand, 29922111 - 29921976
Alignment:
Q  86 gtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactca 185  Q
    |||||||||||||||||||||||||||||||| | || |   ||||  ||||   ||| |||||||||||||||||||| | ||||||||| ||| ||||    
T  29922111 gtgtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaagattcttggtctca 29922012  T
Q  186 gttgcttaaaattaattaccatgatcttctaataga 221  Q
     || |||| ||||| ||| ||  |||||||||||||    
T  29922011 attccttagaattagttatcaaaatcttctaataga 29921976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 29867191 - 29867316
Alignment:
Q  86 gtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactca 185  Q
    |||||||||||| |||||||||||||||||||||   || | ||||  ||||   ||| ||||| ||||||||||| || ||||||||||| ||||||||    
T  29867191 gtgtgttgggggactgcctttgtttttcttattc---taaggaaactgattttattatatggcaaatgaagaaattcggggttgaagattcttggactca 29867287  T
Q  186 gttgcttaaaattaattaccatgatcttc 214  Q
     || |||| ||||| ||||||| ||||||    
T  29867288 attccttagaattagttaccataatcttc 29867316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 19604522 - 19604462
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattacc 205  Q
    |||||||||||| |||||||||||||||| ||||||||||| || |||||||||| |||||    
T  19604522 tggcagatgaaggaatttggagttgaagactcctggactcaattccttaaaattagttacc 19604462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 660906 - 660830
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattaccatgatcttctaataga 221  Q
    |||||||||||| ||||| |||||||||| || |||||||| || |||||||||| ||| ||| |||||| ||||||    
T  660906 tggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttcaaataga 660830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 18983011 - 18982951
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattacc 205  Q
    |||||||||||| |||||||||||||  | |||||||||||||| |||||||||| |||||    
T  18983011 tggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagttacc 18982951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 205
Target Start/End: Complemental strand, 18997657 - 18997597
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattacc 205  Q
    |||||||||||| |||||||||||||  | |||||||||||||| |||||||||| |||||    
T  18997657 tggcagatgaaggaatttggagttgacaagtcctggactcagttccttaaaattagttacc 18997597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 118
Target Start/End: Original strand, 29106678 - 29106792
Alignment:
Q  4 cttgatttggggacggagacatacaattaatacatggtgcctcgtggttttgataaagggccg-ctttacgtggcaactattagtgtgttggggggctgc 102  Q
    ||||||| | ||| ||||||||||||| |||||| | |||||||||| |||||| ||| |||| |   ||| | ||||  || |||||||||||||||||    
T  29106678 cttgattggaggatggagacatacaatcaatacaagttgcctcgtgggtttgatgaagtgccgtcaaaacg-gccaacagttggtgtgttggggggctgc 29106776  T
Q  103 ctttgtttttcttatt 118  Q
    ||||||||||||||||    
T  29106777 ctttgtttttcttatt 29106792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 29859324 - 29859519
Alignment:
Q  4 cttgatttggggacggagacatacaattaatacatggtgcctcgtggttttgataaagggccgctttacgtggcaactattagtgtgttggggggctgcc 103  Q
    |||||||||||||  || ||||||||| ||||| |  |||||||||| |||||| | | ||||| |    |  |||||||| |||||||||||| |   |    
T  29859324 cttgatttggggagtgaaacatacaatcaatacttattgcctcgtgggtttgatgaggtgccgcctgtgataccaactattggtgtgttgggggaccatc 29859423  T
Q  104 tttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaatta 199  Q
    |||||||||||||||  || | | |||   |||||  ||| ||| |||||||||||||||||||||||||||| ||||| |  || ||||||||||    
T  29859424 tttgtttttcttattgttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaagattcttggaccccatttcttaaaatta 29859519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 29445777 - 29445675
Alignment:
Q  83 ttagtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggac 182  Q
    |||||||||||||||||| |||||||| ||||||||  || | | ||||| ||||   ||| |||||||||||| |||| || |||||||| || |||||    
T  29445777 ttagtgtgttggggggcttcctttgttgttcttatttttacaaggaaaccgattttcttatatggcagatgaaggaattaggggttgaagactcttggac 29445678  T
Q  183 tca 185  Q
    |||    
T  29445677 tca 29445675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 29874462 - 29874576
Alignment:
Q  86 gtgtgttgggggg-ctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactc 184  Q
    ||||||||||| | ||| ||||||||||||||||  || | | ||||  |||||  ||| ||||| |||||||||||||| ||||||||||| |||||||    
T  29874462 gtgtgttggggcgactgtctttgtttttcttattgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaagattcttggactc 29874561  T
Q  185 agttgcttaaaatta 199  Q
      || ||||||||||    
T  29874562 cattacttaaaatta 29874576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 29881267 - 29881329
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattaccat 207  Q
    ||||| |||||||||||||| ||||||||||| |||||||| || |||| ||||| |||||||    
T  29881267 tggcaaatgaagaaatttggggttgaagattcttggactcaattccttagaattagttaccat 29881329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 220
Target Start/End: Complemental strand, 6864860 - 6864791
Alignment:
Q  151 atgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattaccatgatcttctaatag 220  Q
    |||||| |||||||||||||||| || ||||||||||| ||||||| || ||| ||| |||||| |||||    
T  6864860 atgaaggaatttggagttgaagagtcttggactcagttccttaaaactagttatcataatcttcaaatag 6864791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 14076689 - 14076765
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattaccatgatcttctaataga 221  Q
    ||||| |||||| |||||||||||||||| || |||||||| || |||||||||| ||| ||  |||||| ||||||    
T  14076689 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaataga 14076765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 14386717 - 14386793
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattaccatgatcttctaataga 221  Q
    ||||| |||||| |||||||||||||||| || |||||||| || |||||||||| ||| ||  |||||| ||||||    
T  14386717 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaataga 14386793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 29899385 - 29899425
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactca 185  Q
    |||||||||||||||||||| |||||||| |||||||||||    
T  29899385 tggcagatgaagaaatttggggttgaagagtcctggactca 29899425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 204
Target Start/End: Complemental strand, 18952964 - 18952905
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattac 204  Q
    |||||||||||| |||||||||||||  | || ||||||||||| |||||||||| ||||    
T  18952964 tggcagatgaaggaatttggagttgacaagtcatggactcagttccttaaaattagttac 18952905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 115
Target Start/End: Original strand, 29899238 - 29899349
Alignment:
Q  4 cttgatttggggacggagacatacaattaatacatggtgcctcgtggttttgataaagggccgctttacgtggcaactattagtgtgttggggggctgcc 103  Q
    |||||||||| |||||||||||| ||  | |||||| |||||| ||| |||||| ||| ||||  |   | | ||||  || ||||||||||||||||||    
T  29899238 cttgatttggagacggagacatagaagcagtacatgttgcctcctgggtttgatgaagtgccgtctgtggagccaacatttggtgtgttggggggctgcc 29899337  T
Q  104 tttgtttttctt 115  Q
    ||||||||||||    
T  29899338 tttgtttttctt 29899349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 19597714 - 19597660
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaatta 199  Q
    |||||||||||| |||||| ||||||||| || ||||||||||| || |||||||    
T  19597714 tggcagatgaaggaatttgaagttgaagagtcatggactcagtttctcaaaatta 19597660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 19645689 - 19645635
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaatta 199  Q
    |||||||||||| |||||||| ||||||| || ||||||| ||| ||||||||||    
T  19645689 tggcagatgaaggaatttggaattgaagagtcatggactctgttacttaaaatta 19645635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 29106825 - 29106886
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattacca 206  Q
    |||||||||||||||||||| |||||||| || ||||||||  |  ||||||||| ||||||    
T  29106825 tggcagatgaagaaatttggggttgaagagtcttggactcaactttttaaaattagttacca 29106886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 12819975 - 12819923
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaat 197  Q
    |||||||||| | |||||||||||||| | ||||||||||| || ||||||||    
T  12819975 tggcagatgacggaatttggagttgaacaatcctggactcaattccttaaaat 12819923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 86 - 199
Target Start/End: Original strand, 3625686 - 3625799
Alignment:
Q  86 gtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagattcctggactca 185  Q
    |||||||||||| ||||||||||||||||||||| || | |  |||| || |   ||| ||||| |||||||||||||| |||||||| || ||||||||    
T  3625686 gtgtgttgggggactgcctttgtttttcttattcttacaaggtaacctatcttattatatggcaaatgaagaaatttggggttgaagagtcttggactca 3625785  T
Q  186 gttgcttaaaatta 199  Q
     || ||||||||||    
T  3625786 atttcttaaaatta 3625799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 6921413 - 6921355
Alignment:
Q  141 tatctggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaatta 199  Q
    ||||||||| |||||| |||||||||||||||| || |||||||| || ||||||||||    
T  6921413 tatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaatta 6921355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 220
Target Start/End: Original strand, 17369675 - 17369750
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaattaattaccatgatcttctaatag 220  Q
    ||||| |||||| |||||||||||||||| || |||||||| || |||||||||| ||| ||  |||||| |||||    
T  17369675 tggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaatag 17369750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 6947939 - 6947885
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaatta 199  Q
    ||||| |||||| |||||||||||||||| || |||||||| || ||||||||||    
T  6947939 tggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaatta 6947885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 6954578 - 6954524
Alignment:
Q  145 tggcagatgaagaaatttggagttgaagattcctggactcagttgcttaaaatta 199  Q
    ||||| |||||| |||||||||||||||| || |||||||| ||| |||||||||    
T  6954578 tggcaaatgaaggaatttggagttgaagaatcttggactcaattgattaaaatta 6954524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 14514924 - 14514965
Alignment:
Q  158 aatttggagttgaagattcctggactcagttgcttaaaatta 199  Q
    ||||||||||||||||||| |||||||| || ||||||||||    
T  14514924 aatttggagttgaagattcttggactcaattccttaaaatta 14514965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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