View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9581_high_17 (Length: 215)
Name: NF9581_high_17
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 8722461 - 8722274
Alignment:
| Q |
18 |
ttaaataatcacaggaaactgaacaaaatatcaaaacatgtcatcagtgcttgagaaaggataggccacaatttgtaccttgcacaaaatgtcagaaaat |
117 |
Q |
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| T |
8722461 |
ttaaataatcacaggaaactgaacaaaatatcaaaacatgtcatcagtgcttgagaaaggataggccacaatttgtaccttgtacaaaatgtcagaaaat |
8722362 |
T |
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| Q |
118 |
atactgtttaagatgtattaaacaatggtacgttttggattacatctaaataaccattccaaagtcatgtatttgttagtataattta |
205 |
Q |
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| T |
8722361 |
atactgtttaagatgtattaaacaatggtacgttttggattacatctaaataaccattccaaagtcatgtatttgttaatataattta |
8722274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 8594264 - 8594098
Alignment:
| Q |
39 |
aacaaaatatcaaaacatgtcatcagtgcttgagaaaggataggccacaatttgtaccttgcacaaaatgtcagaaaatatactgtttaagatgtattaa |
138 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||| |
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| T |
8594264 |
aacaaaatatcaaaacatgtcatcagtgcttgagaaaggataggccacaatttgtaccttgcacaaaatgtcagaaaatgtattgtttaacatgtattaa |
8594165 |
T |
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| Q |
139 |
acaatggtacgttttggattacatctaaataaccattccaaa-gtcatgtatttgttagtataattta |
205 |
Q |
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| T |
8594164 |
acattggtacgttttaga-tacatctaaataaccattccaaaggtcacatatttgttaatataattta |
8594098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 21239585 - 21239767
Alignment:
| Q |
18 |
ttaaataatcacaggaaactgaacaaaatatcaaaacatgtcatcagtgcttgagaaaggataggccacaatttgtaccttgcacaaaatgtcagaaaat |
117 |
Q |
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||||||||| | ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21239585 |
ttaaataattaaaggaaaccgaacaaaatatcaaaacatgtcatcaatgcttgagaaaggataggccacaatttgtaccttgaacaaaatgtcagaaaat |
21239684 |
T |
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| Q |
118 |
atactgtttaagatgtattaaacaatggtacgttttggattacatctaaataaccattccaaagtcatgtatttgttagtata |
200 |
Q |
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||| ||||| ||||| |||||||||||||| ||||| ||||||||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
21239685 |
atattgttttagatgcattaaacaatggtatgttttagattacatctaaatagccatttcaaagtcatgtatttgttaatata |
21239767 |
T |
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