View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9581_low_1 (Length: 689)
Name: NF9581_low_1
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 31 - 679
Target Start/End: Complemental strand, 50555069 - 50554379
Alignment:
| Q |
31 |
atgttgagttgtggtggtgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttctagtgaccatatcctcagcta |
130 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50555069 |
atgttgagttgtggtggtgtgctcatttgacattgattatgaagaaattgattatttagtgatgtggtgaaagagcttctagtgaccatatcctcagcta |
50554970 |
T |
|
| Q |
131 |
acttcacctattataatagtatatgttagttaatttcttcaatcattgatatttattttcgtatgcataatta-------agctcactgtataccttagc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
50554969 |
acttcacctattataatagtatatgttagttaatttcttcaatcagtgatatttattttcgtatgaataattatataataagctcactgtataccttagc |
50554870 |
T |
|
| Q |
224 |
tctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatatagtgttgcattt |
323 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50554869 |
tctcaaagcttcaacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatcagtaaactgtttatatagtgttgcattt |
50554770 |
T |
|
| Q |
324 |
tccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg-------------------ctcacaaaagattat |
404 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |
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| T |
50554769 |
tccagtttcagtttttcaacctgagagatcaaaattcaaatgggaagaaaatgatgactacttatgctgtttagctgttatacatctcacaaaagattat |
50554670 |
T |
|
| Q |
405 |
gctccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcc |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50554669 |
gctccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcc |
50554570 |
T |
|
| Q |
505 |
tgaaaccatgtcatgaatcattattatatcataatttgaaaaccacatataataag----------------aagttagacggaaataccttctttggcg |
588 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
50554569 |
tgaaaccatgtcatgaatcattattatatcataatttgaaaaccaaatataataagaaaagtgttgtatttaaagttagacggaaataccttctttggcg |
50554470 |
T |
|
| Q |
589 |
tttcatatcaactggatttgtaatttgttcacaaggacctgattcattatcttcatcggatggatccgatgaaccacttgctgtccctttg |
679 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50554469 |
tttcatatcaactggatttgtaatttgttcacaaggacctgattcattatcttcatcggatggatccgatgaaccacttgctgtccctttg |
50554379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 202 - 389
Target Start/End: Complemental strand, 50817513 - 50817326
Alignment:
| Q |
202 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
301 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
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|
| T |
50817513 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50817414 |
T |
|
| Q |
302 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
389 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||| |||| |||||||||| |
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| T |
50817413 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50817326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 202 - 389
Target Start/End: Original strand, 50858351 - 50858538
Alignment:
| Q |
202 |
taagctcactgtataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaa |
301 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| | ||||||||| |
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|
| T |
50858351 |
taagctctccgtataccttagctctcaaagcttctacatctgattttagcacttggttatttgtatcagcctcgtgaaattgttgactagcatccgtaaa |
50858450 |
T |
|
| Q |
302 |
ctgtttatatagtgttgcattttccagtttcagtttttcaacctgagatatcaaaattcaaatgtgaagaaagtgatgactacttatg |
389 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||| |||| |||||||||| |
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|
| T |
50858451 |
ctgtttgtatagggttgcattttccagtttcagttttccaacctaagaaatcaaaattcaaatgggaagaaaatgatcactacttatg |
50858538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 407 - 528
Target Start/End: Complemental strand, 50817093 - 50816972
Alignment:
| Q |
407 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg |
506 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | ||| ||| |||||||| |
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|
| T |
50817093 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg |
50816994 |
T |
|
| Q |
507 |
aaaccatgtcatgaatcattat |
528 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50816993 |
aaaccatgtcatgaatcattat |
50816972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 407 - 528
Target Start/End: Original strand, 50858771 - 50858892
Alignment:
| Q |
407 |
tccaaaacattgactagttacctgagcctcaagttcagacaaatgcgcttgttttctccaccttgacctcctggctgactcgcaattagaatccttcctg |
506 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||| ||||||||||||| | ||| ||| |||||||| |
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|
| T |
50858771 |
tccaaaacattgattagttacctgagactcaagttcaaacaaatgcgcttgttttctccgccttgatctcctggctgacttgggatttgaaaccttcctg |
50858870 |
T |
|
| Q |
507 |
aaaccatgtcatgaatcattat |
528 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
50858871 |
aaaccatgtcatgaatcattat |
50858892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 50817650 - 50817528
Alignment:
| Q |
18 |
aatattagtagtcatgttgagttgtggtggtgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttctagtgacc |
117 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |
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|
| T |
50817650 |
aatactagtagtcgtgttgagttgtggcggtgtgctcatttgacattgattatgaagaaactgattgtttagcgatgtgatgaaagagcttctagtgact |
50817551 |
T |
|
| Q |
118 |
atatcctcagctaacttcaccta |
140 |
Q |
| |
|
|||| || ||||||||||||| |
|
|
| T |
50817550 |
atatgcttgactaacttcaccta |
50817528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 50858214 - 50858336
Alignment:
| Q |
18 |
aatattagtagtcatgttgagttgtggtggtgtgctcatttgacattgattatgaagaaactgattgtttagtgatgtggtgaaagaggttctagtgacc |
117 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |
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|
| T |
50858214 |
aatactagtagtcgtgttgagttgtggcggtgtgctcatttgacattgattatgaagaaactgattgtttagcgatgtgatgaaagagcttctagtgact |
50858313 |
T |
|
| Q |
118 |
atatcctcagctaacttcaccta |
140 |
Q |
| |
|
|||| || ||||||||||||| |
|
|
| T |
50858314 |
atatgcttgactaacttcaccta |
50858336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 213 - 345
Target Start/End: Original strand, 1130524 - 1130656
Alignment:
| Q |
213 |
tataccttagctctcaaagcttctacatctgattttagcactcggttatttgtatcagcctcatgaaattgttgactggtatccgtaaactgtttatata |
312 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| |||||||| || || | ||| || |||||||||| |||| ||| |||| ||| ||| ||| |
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|
| T |
1130524 |
tataccttagctctcaaagcttcaacatcggattttagtactcggttgttagtgttagcatcgcgaaattgttggctggcatctgtaagctgcttaaata |
1130623 |
T |
|
| Q |
313 |
gtgttgcattttccagtttcagtttttcaacct |
345 |
Q |
| |
|
| ||||||||||||| ||| || |||||||| |
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|
| T |
1130624 |
ggcttgcattttccagcctcaattgttcaacct |
1130656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 590 - 654
Target Start/End: Original strand, 1131520 - 1131584
Alignment:
| Q |
590 |
ttcatatcaactggatttgtaatttgttcacaaggacctgattcattatcttcatcggatggatc |
654 |
Q |
| |
|
||||||||||| || |||||| |||||||||||||||||| ||||| ||||||||| |||||||| |
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|
| T |
1131520 |
ttcatatcaacagggtttgtactttgttcacaaggacctgcttcatcatcttcatcagatggatc |
1131584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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