View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9581_low_10 (Length: 397)
Name: NF9581_low_10
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Complemental strand, 41820580 - 41820204
Alignment:
| Q |
1 |
cagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaatacatcagcacacac |
100 |
Q |
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| T |
41820580 |
cagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaatacatcagcacacac |
41820481 |
T |
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| Q |
101 |
accaaacttgattgtgtctctagggcatgttgggtttttggaggaaggtggatgatgagggtgcgagtggccgtgatctttgtgaggtggtgggggacat |
200 |
Q |
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| T |
41820480 |
accaaacttgattgtgtctctagggcatgttgggtttttggaggaaggtggatgatgagggtgtgagtggccgtgatctttgtgaggtggtgggggacat |
41820381 |
T |
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| Q |
201 |
ggaacatatgtggagcttaccacagtgaaaaatatgatgttgaggcaaaggagcatagcaaccttggaagccatttggattaatgattaagattaaggtg |
300 |
Q |
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| T |
41820380 |
ggaacatatgtggagcttaccacagtgaaaaatatgatgttgaggcaaaggagcatagcaaccttggaagccatttggattaatgattaagattaaggtg |
41820281 |
T |
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| Q |
301 |
ctaatactcttagtttgatttggtgtgtgagtgagtgatgatgtttgagaggaataagagggggttttatagggaagg |
378 |
Q |
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| T |
41820280 |
ctaatactcttagtttgatttggtgtgtgagtgagtgatgatgtttgaga-gaataagaggggattttatagggaagg |
41820204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 167 - 376
Target Start/End: Original strand, 44829888 - 44830093
Alignment:
| Q |
167 |
gtggccgtgatctttgtgaggtggtgggggacatggaacatatgtggagcttaccacagtgaaaaatatgatgttgaggcaaaggagcatagcaaccttg |
266 |
Q |
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| T |
44829888 |
gtggctgtgatctttgtgaggtggtgggggacatggaacatatgttgagcttaccacagtgaaaaataggatgttgaggcaaaggagcatagcaaccttg |
44829987 |
T |
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| Q |
267 |
gaagccatttggattaatgattaagattaaggtgctaatactc-ttagtttgatttggtgt----gtgagtgagtgatgatgtttgagaggaataagagg |
361 |
Q |
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||||||||||||| | |||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44829988 |
gaagccatttgga---------atgattgaggtgctaatactctttagtttgatttggtgtatgagtgagtgagtgatgatgtttgagaggaataagagg |
44830078 |
T |
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| Q |
362 |
gggttttatagggaa |
376 |
Q |
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||| ||||||||||| |
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| T |
44830079 |
gggctttatagggaa |
44830093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 44829749 - 44829888
Alignment:
| Q |
1 |
cagcttcaagattagcaagaccatcaatgagagagcagcatggtgtctttggtggcttaccaagctcaacattaatcaaacccaatacatcagcacacac |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44829749 |
cagcttcaagattagcaagatcatcaatgagagagcagcatggtgtctttggtggcttaccaagttcaacattaatcaaacccaatacatcagcacacac |
44829848 |
T |
|
| Q |
101 |
accaaacttgattgtgtctctagggcatgttgggtttttg |
140 |
Q |
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||||||||| |||||||||||||| || ||||||| |||| |
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| T |
44829849 |
accaaacttaattgtgtctctaggacaagttgggtgtttg |
44829888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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