View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9581_low_12 (Length: 379)
Name: NF9581_low_12
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 46873480 - 46873112
Alignment:
| Q |
1 |
aaacataatagacaacgcaaccacaaaatgacacacattcaaatcatttaattaatcgctgtaatttgcacatcatatcacataaaatgacattctacac |
100 |
Q |
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| T |
46873480 |
aaacataatagacaacgcaaccacaaaatgacacacattcaaatcatttaattaatcgctgtaatttgcacatcatatcacataaaatgacattctacac |
46873381 |
T |
|
| Q |
101 |
agcatctagaaaattnnnnnnnnnnnntattttatatgattgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagtt |
200 |
Q |
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| T |
46873380 |
agcatctagaaaattaaaaaaaaaca-tattttatatgattgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagtt |
46873282 |
T |
|
| Q |
201 |
attgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtg |
300 |
Q |
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| T |
46873281 |
attgttaccttcttcaccatgagcaaagtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtg |
46873182 |
T |
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| Q |
301 |
cccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctcccctttgc |
370 |
Q |
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| T |
46873181 |
cccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctccccattgc |
46873112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 128 - 301
Target Start/End: Complemental strand, 46890766 - 46890593
Alignment:
| Q |
128 |
tattttatatgattgaacaatataaaacagtagaattatatgataaaaccaaaaccaataatcaaaatgagttattgttaccttcttcaccatgagcaaa |
227 |
Q |
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| T |
46890766 |
tattttatataattaaacaaaataaagcaatagaattatatgataaaaccaaaaccaataagcaaaatgagttattgttaccttcttcaccatgagcaaa |
46890667 |
T |
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| Q |
228 |
gtgacaattctttccaaaggaacaatatcccgtatccttccacttgagacacagcttagtcttccgataagtgc |
301 |
Q |
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| T |
46890666 |
gagacagttcattccaaaggaacaatatcctgtatgcttccaattgcgacacagcttagtcttccgataagtgc |
46890593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 302 - 370
Target Start/End: Complemental strand, 46890502 - 46890434
Alignment:
| Q |
302 |
ccctaaattgtgcaggatcttcatgaaggaatttacacttatctccatagggacatttctcccctttgc |
370 |
Q |
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||||||| |||||||||||||||||||||||| |||| ||||||||||| ||||||| |||||| |||| |
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| T |
46890502 |
ccctaaactgtgcaggatcttcatgaaggaatatacagttatctccatatggacattcctccccattgc |
46890434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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