View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9581_low_13 (Length: 376)
Name: NF9581_low_13
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 48 - 366
Target Start/End: Complemental strand, 11262980 - 11262662
Alignment:
| Q |
48 |
catgcattgcagaaatattaaagataggtgttcaaataacctcaacgaaagattgtgggttagtacaattgcaacatctctatgttccattctttgcagt |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11262980 |
catgcattgcagaaatattaaagataggtgttcaaataaactcaatgaaagattgtgggttagtataattgcaacatctctatgttccattctttgcagt |
11262881 |
T |
|
| Q |
148 |
catttctcaataaagcttaaagatcaaaatttgtactatgcatatatattattgaaggttgcaccaaagctccatttgctagccatctatcatgaaaaac |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11262880 |
catttctcaataaagcttaaagatcaaaatttgtactatgcatatatattattgaaggttgcaccaaagctccatttgctagccatctatcatgaaaaac |
11262781 |
T |
|
| Q |
248 |
tcgaatgttcaccctcaatactaatcttccacattgttccttaccttaccataggtatagcctcataaatactcttccacataaaatttgagttgttcct |
347 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11262780 |
tcgaatgttaaccctcaatactaatcttccacattgctccttaccttaccataggtatagcctcataaatactcttccacataaaatttgagttgttcct |
11262681 |
T |
|
| Q |
348 |
cttttttcacctccaacac |
366 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
11262680 |
cttttttcacctccaacac |
11262662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 6956269 - 6956327
Alignment:
| Q |
270 |
aatcttccacattgttccttaccttaccataggtatagcctcataaatactcttccaca |
328 |
Q |
| |
|
|||||||||| ||||||||| | | ||||| ||||||||||||| |||||||||||||| |
|
|
| T |
6956269 |
aatcttccaccttgttccttgcttgaccatgggtatagcctcatgaatactcttccaca |
6956327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 328
Target Start/End: Complemental strand, 6466979 - 6466921
Alignment:
| Q |
270 |
aatcttccacattgttccttaccttaccataggtatagcctcataaatactcttccaca |
328 |
Q |
| |
|
|||||||||| ||||||||| | | ||||| ||||||||||||| |||||||||||||| |
|
|
| T |
6466979 |
aatcttccaccttgttccttgcttgaccatgggtatagcctcatgaatactcttccaca |
6466921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 328
Target Start/End: Original strand, 6751546 - 6751604
Alignment:
| Q |
270 |
aatcttccacattgttccttaccttaccataggtatagcctcataaatactcttccaca |
328 |
Q |
| |
|
|||||||||| ||||||||| | | ||||| ||||||||||||| |||||||||||||| |
|
|
| T |
6751546 |
aatcttccaccttgttccttgcttgaccatgggtatagcctcatgaatactcttccaca |
6751604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 328
Target Start/End: Original strand, 22009702 - 22009759
Alignment:
| Q |
271 |
atcttccacattgttccttaccttaccataggtatagcctcataaatactcttccaca |
328 |
Q |
| |
|
||||||||| ||||||||| | | ||||| ||||||||||||| |||||||||||||| |
|
|
| T |
22009702 |
atcttccaccttgttccttgcttgaccatgggtatagcctcatgaatactcttccaca |
22009759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University