View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9581_low_15 (Length: 367)
Name: NF9581_low_15
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 45787583 - 45787220
Alignment:
| Q |
1 |
taggcgcttatcaacaacgtgcttctttcacctccctcacgaaaaaagccatcgtaacatcaccatcatgcaccatccaa---gtcaataagcccaccct |
97 |
Q |
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| T |
45787583 |
taggcgcttatcaacaacgtgcttctttcacctccctcacgaaaaaagccatcataacatcaccatcatgcaccatccaacaagtcaataaacccaccct |
45787484 |
T |
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| Q |
98 |
cgatttccaatctcaccataactcctccgataccatcatcgcactttcatccgaaacctttaacttccctcgttgtggcgtgaatttcacagaatacaca |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45787483 |
cgatttccaatctcaccataactcctccgataccatcatcgcactttcatccgaaacctttaacttccctcgttgtggcgtgaatttcacagaatacaca |
45787384 |
T |
|
| Q |
198 |
ccatgtgaggatccgacgagatcattgaggtataagcggagtagaatgatttatagggaaagacactgtccggttaaaggggaagaggatctgaagtgta |
297 |
Q |
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||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45787383 |
ccatgtgaggatccgactagatctttgaggtataagcggagtagaatgatttatagggaaagacactgtccggttaaaggggaagaggatctgaagtgta |
45787284 |
T |
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| Q |
298 |
gggttcctccacctcatggttacaagactccttttacttggccggctagtagggatgttgcttg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45787283 |
gggttcctccacctcatggttacaagactccttttacttggccggctagtagggatgttgcttg |
45787220 |
T |
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