View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9581_low_17 (Length: 320)

Name: NF9581_low_17
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9581_low_17
NF9581_low_17
[»] chr7 (1 HSPs)
chr7 (1-320)||(44266758-44267077)
[»] chr1 (2 HSPs)
chr1 (1-313)||(48743874-48744197)
chr1 (237-283)||(17940494-17940540)
[»] chr3 (3 HSPs)
chr3 (1-177)||(41708939-41709115)
chr3 (227-279)||(41708816-41708868)
chr3 (1-57)||(50430791-50430847)
[»] chr2 (2 HSPs)
chr2 (1-278)||(35785696-35785996)
chr2 (264-313)||(15500635-15500684)
[»] chr4 (5 HSPs)
chr4 (1-128)||(55879291-55879418)
chr4 (268-313)||(6739728-6739773)
chr4 (232-300)||(30449249-30449314)
chr4 (232-300)||(53883017-53883083)
chr4 (232-300)||(53889131-53889197)
[»] chr5 (3 HSPs)
chr5 (1-128)||(22294282-22294409)
chr5 (260-313)||(6359966-6360019)
chr5 (1-81)||(28661861-28661941)
[»] chr8 (1 HSPs)
chr8 (237-276)||(25302532-25302571)


Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 44267077 - 44266758
Alignment:
Q  1 tctggagcgggtagaagatcggaaacgacggaggagcggacgacgcgccaaggaaaagaggttaatcgcagaatcggcgctcttctgcgttttctgcgat 100  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44267077 tctggagcaggtagaagatcggaaacgacggaggagcggacggcgcgccaaggaaaagcggttaatcgcagaatcggcgctcttctgcgttttctgcgat 44266978  T
Q  101 ggtttttaacccgggttagaggtcgatgtccgacccgattagggttgacccggtaccaaccagcatggattcgacccgttttcacttgaaatggtttgat 200  Q
    ||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  44266977 ggtttttaacccgggttagaggttgatgcccgacccgactagggttgacccggtaccaaccagcatggattcgacccgttttcacttgaaaaggtctgat 44266878  T
Q  201 tataccattaatttcgnnnnnnngggagttactggcgtttaattgaatcattatgtttggaaattgggaatttttctcctctttttctctgaaattgtaa 300  Q
    ||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44266877 tataccattaatttcgtttttttgggagttattggcgtttaattgaatcattatgtttggaaattgggaatttttctcctctttttctctgaaattgtaa 44266778  T
Q  301 ctgcttcaattatcattcaa 320  Q
    ||||||||||||||||||||    
T  44266777 ctgcttcaattatcattcaa 44266758  T

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Target: chr1 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 48744197 - 48743874
Alignment:
Q  1 tctggagcgggtagaagatcggaaacgacggaggagcggacgacgcgccaaggaaaagaggttaatcgcagaatcggcgctcttctgcgttttctgcgat 100  Q
    |||||||||||||||||||||||||||||||            |||||| |||||||| ||||||||||||||||||| |||||||||||||||||| ||    
T  48744197 tctggagcgggtagaagatcggaaacgacgg------------cgcgccgaggaaaagcggttaatcgcagaatcggcactcttctgcgttttctgcaat 48744110  T
Q  101 ggtttttaacccgggttagaggtcgatg-tccgacccgattagggttgacccggtaccaaccagcatggattcgacccg--------------------- 178  Q
    ||||||| |||||||| |||||| ||||  || |||||||||||| ||||||||||||||||| |||||||||||||||                         
T  48744109 ggtttttgacccgggtcagaggttgatgacccaacccgattagggctgacccggtaccaaccaacatggattcgacccgtttcggttagaatttgatcca 48744010  T
Q  179 ttttcacttgaaatggtttgattataccattaatttcg-nnnnnnngggagttactggcgtttaattgaatcattatgtttggaaattgggaatttttct 277  Q
    ||||||||||||| ||| ||||||||||||||||||||        |||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  48744009 ttttcacttgaaaaggtctgattataccattaatttcgttttttttgggagttattggtgtttaattgaatcattatgtttggaaattgggaatttttct 48743910  T
Q  278 cctctttttctctgaaattgtaactgcttcaattat 313  Q
    |||||||||||||||||||||||||| |||||||||    
T  48743909 cctctttttctctgaaattgtaactgtttcaattat 48743874  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 283
Target Start/End: Original strand, 17940494 - 17940540
Alignment:
Q  237 gtttaattgaatcattatgtttggaaattgggaatttttctcctctt 283  Q
    ||||||||||||||||| ||| |||||||||||||||||||| ||||    
T  17940494 gtttaattgaatcattaggttaggaaattgggaatttttctcatctt 17940540  T

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Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 41709115 - 41708939
Alignment:
Q  1 tctggagcgggtagaagatcggaaacgacggaggagcggacgacgcgccaaggaaaagaggttaatcgcagaatcggcgctcttctgcgttttctgcgat 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||||||||||||    
T  41709115 tctggagcgggtagaagatcggaaacgacggcggagcggacgacgcgccgaggaaaagcggttaattgcaaaatcggcgctcttctgcgttttctgcgat 41709016  T
Q  101 ggtttttaacccgggttagaggtcgatgtccgacccgattagggttgacccggtaccaaccagcatggattcgaccc 177  Q
    |||||||||||||||| |||||| |||| ||    ||| ||||||||||||||||||||||||||||||||||||||    
T  41709015 ggtttttaacccgggtcagaggttgatgacccgatcgactagggttgacccggtaccaaccagcatggattcgaccc 41708939  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 279
Target Start/End: Complemental strand, 41708868 - 41708816
Alignment:
Q  227 agttactggcgtttaattgaatcattatgtttggaaattgggaatttttctcc 279  Q
    ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||    
T  41708868 agttattggtgtttaattgaatcattatgtttgaaaattgggaatttttctcc 41708816  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 50430847 - 50430791
Alignment:
Q  1 tctggagcgggtagaagatcggaaacgacggaggagcggacgacgcgccaaggaaaa 57  Q
    |||||||||| ||| |||||||||||||| | |||||||||| |||||  |||||||    
T  50430847 tctggagcggttaggagatcggaaacgacagcggagcggacggcgcgcagaggaaaa 50430791  T

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Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 35785696 - 35785996
Alignment:
Q  1 tctggagcgggtagaagatcggaaacgacggaggagcggacgacgcgccaaggaaaagaggttaatcgcagaatcggcgctcttctgcgttttctgcgat 100  Q
    ||||||||||||||||||||||||||||||| |||||||| | |||||| || ||||| ||||||| ||||||||||||| |||||||||||||||| ||    
T  35785696 tctggagcgggtagaagatcggaaacgacggcggagcggatggcgcgccgagaaaaagcggttaatggcagaatcggcgcgcttctgcgttttctgcaat 35785795  T
Q  101 ggtttttaacccgggttagaggtcgatg-tccgacccgattagggttgacccggtaccaaccagcatggattc----------------------gaccc 177  Q
    ||||||| |||||||| |||||| ||||  ||||| ||| |||||||||||||| |||||||||||| |||||                      |||||    
T  35785796 ggtttttgacccgggtcagaggttgatgacccgacacgactagggttgacccggcaccaaccagcatagattcgaccccgtttcggttagattttgaccc 35785895  T
Q  178 gttttcacttgaaatggtttgattataccattaatttcgnnnnnnngggagttactggcgtttaattgaatcattatgtttggaaattgggaatttttct 277  Q
    |||||||||||||| ||| ||||||||||||||||||||       |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  35785896 gttttcacttgaaaaggtctgattataccattaatttcgtttttttgggacttattggtgtttaattgaatcattatgtttggaaattgggaatttttct 35785995  T
Q  278 c 278  Q
    |    
T  35785996 c 35785996  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 15500635 - 15500684
Alignment:
Q  264 ttgggaatttttctcctctttttctctgaaattgtaactgcttcaattat 313  Q
    ||||||||||||||||||||||||||||||| | ||| || |||||||||    
T  15500635 ttgggaatttttctcctctttttctctgaaactataattgtttcaattat 15500684  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 55879291 - 55879418
Alignment:
Q  1 tctggagcgggtagaagatcggaaacgacggaggagcggacgacgcgccaaggaaaagaggttaatcgcagaatcggcgctcttctgcgttttctgcgat 100  Q
    |||| ||||| ||| |||||||||||||| | |||||||||||  |||| |||||||  |    |||||||||||| |||||||||||||||||||| ||    
T  55879291 tctgcagcggttaggagatcggaaacgacagcggagcggacgattcgccgaggaaaatcgaaagatcgcagaatcgacgctcttctgcgttttctgcaat 55879390  T
Q  101 ggtttttaacccgggttagaggtcgatg 128  Q
    ||||||| |||||| | |||||| ||||    
T  55879391 ggtttttgacccggttcagaggttgatg 55879418  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 313
Target Start/End: Complemental strand, 6739773 - 6739728
Alignment:
Q  268 gaatttttctcctctttttctctgaaattgtaactgcttcaattat 313  Q
    |||||||||||||||||||||||||||| |||| || |||||||||    
T  6739773 gaatttttctcctctttttctctgaaatagtaattgattcaattat 6739728  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 30449249 - 30449314
Alignment:
Q  232 ctggcgtttaattgaatcattatgtttggaaattgggaatttttctcctctttttctctgaaattgtaa 300  Q
    |||| ||||||||||||||||| | |  ||||||||||||||||||| ||   ||||||||||||||||    
T  30449249 ctggtgtttaattgaatcattaggataagaaattgggaatttttctcatc---ttctctgaaattgtaa 30449314  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 53883017 - 53883083
Alignment:
Q  232 ctggcgtttaattgaatcattatgtttggaaattgggaatttttctcctctttttctctgaaattgtaa 300  Q
    |||| ||||||||||||||||| ||| |||||||||||  |||| | ||| | ||||||||||||||||    
T  53883017 ctggtgtttaattgaatcattaggttaggaaattggga--tttttttctcatcttctctgaaattgtaa 53883083  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 300
Target Start/End: Original strand, 53889131 - 53889197
Alignment:
Q  232 ctggcgtttaattgaatcattatgtttggaaattgggaatttttctcctctttttctctgaaattgtaa 300  Q
    |||| ||||||||||||||||| ||| |||||||||||  |||| | ||| | ||||||||||||||||    
T  53889131 ctggtgtttaattgaatcattaggttaggaaattggga--tttttttctcatcttctctgaaattgtaa 53889197  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 22294282 - 22294409
Alignment:
Q  1 tctggagcgggtagaagatcggaaacgacggaggagcggacgacgcgccaaggaaaagaggttaatcgcagaatcggcgctcttctgcgttttctgcgat 100  Q
    |||| ||||| ||| |||||||||||||  | |||||||||| |||||| |||||||  ||   || ||| |||| |||||||||||| |||||||| ||    
T  22294282 tctgaagcggttaggagatcggaaacgatagcggagcggacggcgcgccgaggaaaatcggaagattgcaaaatcagcgctcttctgcattttctgcaat 22294381  T
Q  101 ggtttttaacccgggttagaggtcgatg 128  Q
    ||||||  |||||| | |||||| ||||    
T  22294382 ggttttcgacccggttcagaggttgatg 22294409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 6359966 - 6360019
Alignment:
Q  260 gaaattgggaatttttctcctctttttctctgaaattgtaactgcttcaattat 313  Q
    ||||||| |||||||||||||||| ||||||||||| |||| || |||||||||    
T  6359966 gaaattgtgaatttttctcctcttattctctgaaatagtaattgattcaattat 6360019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 28661941 - 28661861
Alignment:
Q  1 tctggagcgggtagaagatcggaaacgacggaggagcggacgacgcgccaaggaaaagaggttaatcgcagaatcggcgct 81  Q
    |||||||||||| |||||||||||||||||| ||| ||  ||  ||||| |||||||| |||   |||| |||||||||||    
T  28661941 tctggagcgggttgaagatcggaaacgacggtggatcgtgcggagcgccgaggaaaagcggtggttcgccgaatcggcgct 28661861  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 25302532 - 25302571
Alignment:
Q  237 gtttaattgaatcattatgtttggaaattgggaatttttc 276  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  25302532 gtttaattgaatcattaggttaggaaattgggaatttttc 25302571  T

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