View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9581_low_19 (Length: 279)
Name: NF9581_low_19
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_19 |
 | |
|
| [»] scaffold0299 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 36847806 - 36848056
Alignment:
| Q |
13 |
agcataggaccatatgtagcaagttaagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgataggnnnnnnnngcataaatagaaagaatg |
112 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36847806 |
agcacaggaccatatgtagcaagttgagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgataggaaaaaaaagcataaatagaaagaatg |
36847905 |
T |
|
| Q |
113 |
gaaggattaagtgttcattttattagttctattgacatagaaataaactttaaaagaaaaataccaggatctcatggtaaacgacggtacgaagggcttc |
212 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36847906 |
gaaggattaagtgttcattttat-agttctattgacatagaaataatctttaaaagaaaaataccaggatctcatggtaaacgacggtacgaagggcttc |
36848004 |
T |
|
| Q |
213 |
cccactctttgtccttctttcaggcctaaaatacttgacggaatcaagatat |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36848005 |
cccactctttgtccttctttcaggcctaaaatacttgacggaatcaagatat |
36848056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 25 - 264
Target Start/End: Original strand, 6162193 - 6162439
Alignment:
| Q |
25 |
tatgtagcaagttaagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgataggnnnnnnnng------cataaatagaaagaatggaagga |
118 |
Q |
| |
|
||||||||||||| ||||||| |||| || ||||||||||||||||||||||||||||| | ||||| ||| ||||||||| || |
|
|
| T |
6162193 |
tatgtagcaagttgagaaaccccttttgttacaaaaatcaaggtatccaatctgatgataagaaagaaagaaaaaatcataagaagagagaatggaaaga |
6162292 |
T |
|
| Q |
119 |
ttaagtgttcattttattagttctattgacatagaaataaactttaaaagaaaaa-taccaggatctcatggtaaacgacggtacgaagggcttccccac |
217 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| | ||||||||||||| ||||| |||||||||||||||| ||||| || ||||| |||| |
|
|
| T |
6162293 |
ttaagtgttcattttattagttttattggcatagaaatagagtttaaaagaaaaaataccaatatctcatggtaaacgaaggtacaaattgcttctccac |
6162392 |
T |
|
| Q |
218 |
tctttgtccttctttcaggcctaaaatacttgacggaatcaagatat |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6162393 |
tctttgtccttctttcaggcctaaaatacttgacagaatcaagatat |
6162439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 184
Target Start/End: Original strand, 36859373 - 36859530
Alignment:
| Q |
22 |
ccatatgtagcaagttaagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgatagg----nnnnnnnngcataaatagaaagaatggaagg |
117 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
36859373 |
ccatatgtagcaagttgagaaaccacctttcttgcaaaaatcaaggtatccaatctgatgataagaaaaaaaaagaagcataaatagaaagaatggaagg |
36859472 |
T |
|
| Q |
118 |
attaagtgttcattttattagttctattgacatagaaataaactttaaaagaaaaataccaggatct |
184 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
36859473 |
atta---------tttattagttctcttgacatagaaataaagtttaaaagaaaaataccagtatct |
36859530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 6765628 - 6765885
Alignment:
| Q |
13 |
agcataggaccatatgtagcaagttaagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgata------ggnnnnnnnngcataaatagaa |
106 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||| ||| ||| ||||||||||| ||||||||||||||||| | |||||| | || |
|
|
| T |
6765628 |
agcacaggcccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgatataagaagaaaaaaaaagcataagcaaaa |
6765727 |
T |
|
| Q |
107 |
agaatggaaggattaagtgttcattttattagttctattgacatagaaataaactttaaaagaaaaataccaggatctcatggtaaacgacggtacgaag |
206 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||| |||| ||||| | ||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
6765728 |
aaaaaggaaggattaagtgttcattttattagttctattggcataaaaatagagtttgaaagaaaaataccaatatctcatggtaaacgacggtacgaag |
6765827 |
T |
|
| Q |
207 |
ggcttccccactctttgtccttctttcaggcctaaaatacttgacggaatcaagatat |
264 |
Q |
| |
|
||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6765828 |
ggcatcgccactctttgtccttttttcaggcctaaaatacttgacggaatcaagatat |
6765885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 103 - 264
Target Start/End: Complemental strand, 6679822 - 6679661
Alignment:
| Q |
103 |
agaaagaatggaaggattaagtgttcattttattagttctattgacatagaaataaactttaaaagaaaaataccaggatctcatggtaaacgacggtac |
202 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | |||||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
6679822 |
agaaagaatggaaggataaagtgttcattttattagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaaggtac |
6679723 |
T |
|
| Q |
203 |
gaagggcttccccactctttgtccttctttcaggcctaaaatacttgacggaatcaagatat |
264 |
Q |
| |
|
| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
6679722 |
gtagggcttctccactctttgtcctttgtttaggcctaaaatacttgacggaatcaagatat |
6679661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 105 - 264
Target Start/End: Original strand, 6774466 - 6774625
Alignment:
| Q |
105 |
aaagaatggaaggattaagtgttcattttattagttctattgacatagaaataaactttaaaagaaaaataccaggatctcatggtaaacgacggtacga |
204 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||| | |||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
6774466 |
aaagaatggaaggattaagtgttcgttttattagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacgaaggtacgt |
6774565 |
T |
|
| Q |
205 |
agggcttccccactctttgtccttctttcaggcctaaaatacttgacggaatcaagatat |
264 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
6774566 |
agggcttctccactctttgtcctttgtttaggcctaaaatacttgacggaatcaagatat |
6774625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 6679910 - 6679848
Alignment:
| Q |
22 |
ccatatgtagcaagttaagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgata |
84 |
Q |
| |
|
|||||||||||||||| ||||||| ||| ||| ||||||||||| ||||||||||||||||| |
|
|
| T |
6679910 |
ccatatgtagcaagttgagaaacccctttccttacaaaaatcaagatatccaatctgatgata |
6679848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 46522356 - 46522102
Alignment:
| Q |
13 |
agcataggaccatatgtagcaagttaagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgataggnnnnnnnng-----cataaatagaaa |
107 |
Q |
| |
|
|||| ||| ||||||||||||||| | |||||| |||| || ||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
46522356 |
agcacaggcccatatgtagcaagtcaggaaacccctttttttacaaaaatcaaggtatccaatctgatgataagaaagaaaaaaaaaacataaatagaaa |
46522257 |
T |
|
| Q |
108 |
gaatggaaggattaagtgttcattttattagttctattgacatagaaataaactttaaaagaaaaataccaggatctcatggtaaacgacggtacgaagg |
207 |
Q |
| |
|
||||| ||||||| |||| |||||||||||||||||||| ||| |||||| |||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
46522256 |
gaatgtaaggattgagtgctcattttattagttctattggcattgaaatag--tttaaaagaaaaataccaatatctcatggtaaacgaaggtacgaagg |
46522159 |
T |
|
| Q |
208 |
gcttccccactctttgtccttctttcaggcctaaaatacttgacggaatcaagatat |
264 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
46522158 |
gcttctccactctttgtccttctttcaggcataaaatacttgacagaatcaagatat |
46522102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 264
Target Start/End: Complemental strand, 49881903 - 49881667
Alignment:
| Q |
13 |
agcataggaccatatgtagcaagttaagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgataggnnnnnnnng-cataaatagaaagaat |
111 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
49881903 |
agcacaggcccatatgtagcaagttgagaaaccccgtttcttacaaaaatcaaggtatccaatctgatgataggaagaaaaaaacataaatagaaagaat |
49881804 |
T |
|
| Q |
112 |
ggaaggattaagtgttcattttattagttctattgacatagaaataaactttaaaagaaaaataccaggatctcatggtaaacgacggtacgaagggctt |
211 |
Q |
| |
|
|||| || |||||||||||| |||||||||| | |||||||||||||||||| |||||||||||||| | |||||||||||||| |
|
|
| T |
49881803 |
ggaa----------------tttttagttctattggcatagaaatagagtttaaaagaaaaataccaatatctcatggtaaacaaaggtacgaagggctt |
49881720 |
T |
|
| Q |
212 |
ccccactctttgtccttctttcaggcctaaaatacttgacggaatcaagatat |
264 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
49881719 |
ctccactctttgtccttctctcaggcctaaaatacttgacagaatcaagatat |
49881667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 103 - 234
Target Start/End: Complemental strand, 13584 - 13459
Alignment:
| Q |
103 |
agaaagaatggaaggattaagtgttcattttattagttctattgacatagaaataaactttaaaagaaaaataccaggatctcatggtaaacgacggtac |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
13584 |
agaaagaatggaaggattaagtgttcattttattagttctatttgcatagaaatagagtttaaaa------taccaatatctcatggtaaacgacggtaa |
13491 |
T |
|
| Q |
203 |
gaagggcttccccactctttgtccttctttca |
234 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |
|
|
| T |
13490 |
gaagggcttcaccactctttgtccttctttca |
13459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 26 - 264
Target Start/End: Complemental strand, 18135911 - 18135667
Alignment:
| Q |
26 |
atgtagcaagttaagaaaccatttttcttgcaaaaatcaaggtatccaatctgatgatagg--------nnnnnnnngcataaatagaaagaatggaagg |
117 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
18135911 |
atgtagcaagttgagaaaccccttttcttataaaaatcaaggtatccaatctgatgacaggaaaaaaaaaaaaaaaagcataaatagaaagaatggaagg |
18135812 |
T |
|
| Q |
118 |
attaagtgttcattttattagttctattgacatagaaataaactttaaaagaaaaataccaggatctcatggtaaacgacgg-------tacgaagggct |
210 |
Q |
| |
|
|||||||||||||||||||| |||||||||| | ||||||| |||||||||| ||||||||||||| || || | ||||||||| |
|
|
| T |
18135811 |
attaagtgttcattttatta---------tcatagaaatagagtttaaaataaaaataccaatatctcatggtaaatgaaggcacaaacttcgaagggct |
18135721 |
T |
|
| Q |
211 |
tccccactctttgtccttctttcaggcctaaaatacttgacggaatcaagatat |
264 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
18135720 |
tatccactctttgtccttctttcaggtctaaaatacttgaaggaatcaagatat |
18135667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University