View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9581_low_2 (Length: 533)
Name: NF9581_low_2
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 239 - 523
Target Start/End: Complemental strand, 25977948 - 25977661
Alignment:
| Q |
239 |
aatcgcgtgttactttaacctatttga-tgtgtgttattttaacctgtttaatgcctattcagatctcgatcaaagacaggtcctcgctattaaaattga |
337 |
Q |
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| T |
25977948 |
aatcgcgtgttactttaacctatttgactgtatgttattttaatctgtttaatgcctattcagatctcgatcaaagacaggtcttcgctattaaaattga |
25977849 |
T |
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| Q |
338 |
ctatcacataaaatatttttgcaagtgctttaattttggtgaaatcgactctct--acctcaaacatacgccatcagatcacaaagtgttttgcccttca |
435 |
Q |
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| T |
25977848 |
ctatcacataaaatatttttacaagtgctttaattttggtgaaatcgactctctctacctcaaacatacgccatcagatcacaaagtgttttgcccttca |
25977749 |
T |
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| Q |
436 |
taattgatttgcaaaggttataggttgcttcccatatttcttcactcatattaggttcaattttactcacttcattgctttccctttg |
523 |
Q |
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| T |
25977748 |
taattgatttgcaaaggttataggttgcttcccatatttcttcactcatattaggttcaattttactcacttcattgctttccctttg |
25977661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 25978377 - 25978187
Alignment:
| Q |
19 |
ttgtacttttgcagaacgaagcgctttgagcttgaaccaatattacggagagacaactttagatttggacaaatattctcttacaatgttgctgaaatct |
118 |
Q |
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| T |
25978377 |
ttgtacttttgcagaatgaagcgctttgagcttgaaccaatattacggagagacaactttagatttggacaaatattctcttacaatgttgctgaaatct |
25978278 |
T |
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| Q |
119 |
tatcttcagtttgcccaactccaacgtctcttctctaaaccataaactttcttcattggtgtaaaaccaaagctattcaaattgaaaaaggt |
210 |
Q |
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| T |
25978277 |
tatcttcattttgcccaactccaacgtctcttctctcaa-cagaaactttcttcactggtgtaaaagcaaagctattcaaactgaaaaaggt |
25978187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 377 - 523
Target Start/End: Complemental strand, 25963584 - 25963436
Alignment:
| Q |
377 |
tgaaatcgactctc--tacctcaaacatacgccatcagatcacaaagtgttttgcccttcataattgatttgcaaaggttataggttgcttcccatattt |
474 |
Q |
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|||||||||||||| ||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||| |||| |||| ||| |||||| |
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| T |
25963584 |
tgaaatcgactctccctacctcaaacataaaccattagatcaccaagtgttttgcccttcataattgatttgcaaagattattagttgattctcatattc |
25963485 |
T |
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| Q |
475 |
cttcactcatattaggttcaattttactcacttcattgctttccctttg |
523 |
Q |
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| T |
25963484 |
cttcactcatattagttgcgattttactcactccattgctttccctttg |
25963436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 25963673 - 25963597
Alignment:
| Q |
241 |
tcgcgtgttactttaacctatttgat-gtgtgttattttaacctgtttaatgcctattcagatctcgatcaaagaca |
316 |
Q |
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| T |
25963673 |
tcgcgtgttactttaccctatttgctcgccagttgttttaacctatttaatgtccattcagatctcgatcaaagaca |
25963597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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