View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9581_low_21 (Length: 270)
Name: NF9581_low_21
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 48319912 - 48320154
Alignment:
| Q |
18 |
tgattaagtgctcgcagttcggtttggttcaacaaaaccggaatctgaatttcaggtatactctgttgttgattctcatacattcttgatgaactatcac |
117 |
Q |
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| T |
48319912 |
tgattaagtgctcgcagttcggtttggttcaacaaaatgggaatctgaatttcaggtatactttgttgttgattctcatatattcttgatgaactatcac |
48320011 |
T |
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| Q |
118 |
ccacttcaaggctatttcttccaaatgaaaaattattactgttttgatcatattgatcttgaaccattggaacagaaaatgtttcatttgtactaccatt |
217 |
Q |
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| T |
48320012 |
ccacttcaaggctatttcttccaaatgaaaaattaatactgttttgatcatattgatcttgaaccattggaacagaaaatgtttcatttgtactaccatt |
48320111 |
T |
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| Q |
218 |
tccatgttgttgtaacataacatccgaaaatgaatcagtatta |
260 |
Q |
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| T |
48320112 |
tccatgttgttgtaacataacatccgaaaatgaatcagtatta |
48320154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 26326027 - 26325883
Alignment:
| Q |
79 |
tctgttgttgattctcatacattcttgatgaactatcacccacttcaaggctatttcttccaaatgaaaaattattactgttttgatcatattgatcttg |
178 |
Q |
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| T |
26326027 |
tctgttgttgattctcattcgttcgtgatgaacta---cccgcttcaaagttattcattccaaatgaaacattattatttggctgaccaagttgattttg |
26325931 |
T |
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| Q |
179 |
aaccattggaacagaaaatgtttcatttgtactaccatttccatgttg |
226 |
Q |
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| T |
26325930 |
aaccattggaagagaaaatgtttcattagtagtaccatgtccatgttg |
26325883 |
T |
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