View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9581_low_27 (Length: 250)
Name: NF9581_low_27
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 4017309 - 4017074
Alignment:
| Q |
14 |
aggacttaaacagt----gctccgtgtttggaacccagccacccggacagtatctcaaaaatttggttctttttcgtgatcgtggagatttcggctttgc |
109 |
Q |
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|||||||||||||| |||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4017309 |
aggacttaaacagtactggctccgtgtttggagcccagccaccgggatagtatctcaaaaatttggttctttttcgtgatcatggagatttcggctttgc |
4017210 |
T |
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| Q |
110 |
atttggatgtgataattcaaccggaacttataaagtggtggcgt--ggtgatcggaagataacatcagattcagaggtgaaagttctcaatttgggtgat |
207 |
Q |
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||||||||||||||||||||| | |||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4017209 |
atttggatgtgataattcaactgcaacttataaagtggtggcatacggtgatcggaagacaacatcagattcagaggtgaaagttctcaatttgggtgat |
4017110 |
T |
|
| Q |
208 |
gatgtttggagaaatattgacagttttgatggtctt |
243 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
4017109 |
gatgtttggagaaatattgacagttttgatggtctt |
4017074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 94 - 234
Target Start/End: Complemental strand, 4015416 - 4015280
Alignment:
| Q |
94 |
gagatttcggctttgcatttggatgtgataattcaaccggaacttataaagtggtggcgt--ggtgatcggaagataacatcagattcagaggtgaaagt |
191 |
Q |
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||||||||| |||||| |||||||||||||||||||| ||| |||||||||||||||||| || | || ||| |||||||||| |||||||| |
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| T |
4015416 |
gagatttcgactttgcctttggatgtgataattcaactggagcttataaagtggtggcgttctgtaaacgagagacaacatcagat------gtgaaagt |
4015323 |
T |
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| Q |
192 |
tctcaatttgggtgatgatgtttggagaaatattgacagtttt |
234 |
Q |
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| T |
4015322 |
tctcaacttgggtgttgatgtttggagaaacattgaaagtttt |
4015280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 21855869 - 21855820
Alignment:
| Q |
104 |
ctttgcatttggatgtgataattcaaccggaacttataaagtggtggcgt |
153 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21855869 |
ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt |
21855820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 4570568 - 4570690
Alignment:
| Q |
111 |
tttggatgtgataattcaaccggaacttataaagtggtggcgtggtgatcggaagataacatcagattcagaggtgaaagttctcaatttg---ggtgat |
207 |
Q |
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| T |
4570568 |
tttggatgtgataattcaaacgaaacttataaagtggtggcgtactgtaatcaagaga----cagcatcagaggtcagagttctcaatttgggtggtgat |
4570663 |
T |
|
| Q |
208 |
gatgtttggagaaatattgacagtttt |
234 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
4570664 |
gatgtttggagaaatattgaaagtttt |
4570690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 10218605 - 10218654
Alignment:
| Q |
104 |
ctttgcatttggatgtgataattcaaccggaacttataaagtggtggcgt |
153 |
Q |
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||||||||||||||||| |||||||||||||| | |||||||||||||| |
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| T |
10218605 |
ctttgcatttggatgtgttaattcaaccggaagctttaaagtggtggcgt |
10218654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 39379474 - 39379425
Alignment:
| Q |
184 |
gtgaaagttctcaatttgggtgatgatgtttggagaaatattgacagttt |
233 |
Q |
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|
|||| |||| ||| |||||||||| ||||||||||||||||||| ||||| |
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| T |
39379474 |
gtgagagttttcagtttgggtgataatgtttggagaaatattgaaagttt |
39379425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 24331385 - 24331336
Alignment:
| Q |
104 |
ctttgcatttggatgtgataattcaaccggaacttataaagtggtggcgt |
153 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24331385 |
ctttgcctttggatgtgataattcaaccggaacttataaagtggtggcgt |
24331336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 29880928 - 29880981
Alignment:
| Q |
181 |
gaggtgaaagttctcaatttgggtgatgatgtttggagaaatattgacagtttt |
234 |
Q |
| |
|
||||||| |||||||||| | |||||||||||||||||||||||||| |||||| |
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| T |
29880928 |
gaggtgagagttctcaatcttggtgatgatgtttggagaaatattgaaagtttt |
29880981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 29866914 - 29866964
Alignment:
| Q |
184 |
gtgaaagttctcaatttgggtgatgatgtttggagaaatattgacagtttt |
234 |
Q |
| |
|
|||| |||||||||||| ||||||||| ||||||||||||||| |||||| |
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| T |
29866914 |
gtgagagttctcaatttcggtgatgatcgttggagaaatattgaaagtttt |
29866964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 3625415 - 3625467
Alignment:
| Q |
181 |
gaggtgaaagttctcaatttgggtgatgatgtttggagaaatattgacagttt |
233 |
Q |
| |
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|||||||||||||||| ||| |||||| ||||||||||||||||||| ||||| |
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| T |
3625415 |
gaggtgaaagttctcagttttggtgataatgtttggagaaatattgaaagttt |
3625467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 3565398 - 3565450
Alignment:
| Q |
181 |
gaggtgaaagttctcaatttgggtgatgatgtttggagaaatattgacagttt |
233 |
Q |
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||||||| |||| ||| ||| |||||| ||||||||||||||||||| ||||| |
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| T |
3565398 |
gaggtgagagttttcagtttaggtgataatgtttggagaaatattgaaagttt |
3565450 |
T |
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