View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9581_low_28 (Length: 246)
Name: NF9581_low_28
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_28 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 2756076 - 2755848
Alignment:
| Q |
18 |
cttatacatattttgaaactcatcgatcaatcaagtttctgcacctccattttgattcaatttaggtgggaatggaattctttcaaagggctaaagtggt |
117 |
Q |
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| T |
2756076 |
cttatacatattttgaaactcatcgatcaatcaagtttctgcacctccattttgattcaatttaggtgggaatggaattctttcaaagggctaaagtggt |
2755977 |
T |
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| Q |
118 |
gcgtttgagaagccaccataacaaatatttgttggcagatgatgacaaagaaggtgtttaccaagatcgtcttggttgctacaacaatgctaaatggacg |
217 |
Q |
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| T |
2755976 |
tcgtttgagaagccaccataacaaatatttgttggcagatgatgacaaagaaggtgtttaccaagatcgtcttggttgctacaacaatgctaaatggacg |
2755877 |
T |
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| Q |
218 |
gtggagtttgtagatggtggaaacttgat |
246 |
Q |
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| T |
2755876 |
gtggagtttgtagatggtggaaacttgat |
2755848 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 225
Target Start/End: Original strand, 3098725 - 3098863
Alignment:
| Q |
87 |
gaatggaattctttcaaagggctaaagtggtgcgtttgagaagccaccataacaaatatttgttggcagatgatgacaaagaaggtgtttaccaagatcg |
186 |
Q |
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| T |
3098725 |
gaatggagttcttccaaaaggcgaaagtggtgcgcctaaggagccaccatgataaatacatgttggcacatgaagatcaagaaaacgtctaccaagaccg |
3098824 |
T |
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| Q |
187 |
tcttggttgctacaacaatgctaaatggacggtggagtt |
225 |
Q |
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| T |
3098825 |
caatggttgctacgacaatgcaaaatggacggtcgagtt |
3098863 |
T |
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