View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9581_low_3 (Length: 511)

Name: NF9581_low_3
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9581_low_3
NF9581_low_3
[»] chr2 (2 HSPs)
chr2 (1-495)||(11011272-11011766)
chr2 (415-493)||(11001176-11001257)
[»] chr5 (7 HSPs)
chr5 (13-284)||(11508928-11509206)
chr5 (13-284)||(11531114-11531392)
chr5 (13-284)||(11501531-11501810)
chr5 (13-284)||(11516300-11516579)
chr5 (13-284)||(11523702-11523981)
chr5 (13-284)||(11562065-11562344)
chr5 (13-284)||(11538585-11538862)
[»] chr7 (1 HSPs)
chr7 (1-241)||(17613692-17613924)
[»] chr4 (1 HSPs)
chr4 (1-217)||(40492269-40492485)
[»] chr1 (1 HSPs)
chr1 (1-178)||(35602301-35602479)
[»] scaffold0263 (1 HSPs)
scaffold0263 (57-241)||(6399-6583)


Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 11011272 - 11011766
Alignment:
Q  1 aaaagcttatgtgttggcttcattgttattttattgttcctaatactcttttggtgcatttggaatgtcaatcgaaagaggtgtcctccaaaaaacttag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  11011272 aaaagcttatgtgttggcttcattgttattttattgttcctaatgatcttttggtgcatttggaatgttagtcgaaagaggtgtcctccaaaaaacttag 11011371  T
Q  101 acaaggtttttggttaatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatggtatctttgaggttgatgatgcg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  11011372 acaaggtttttggttaatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatggtatctttgagtttgatgatgca 11011471  T
Q  201 gtggagaagattaaggttctatcttagttttggagcttgcaagattgggccaagtttgttttacgagtggtgttggaatccccgtgaatgttccttagat 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11011472 gtggagaagattaaggttctatcttggttttggagcttgcaagattgggccaagtttgttttacgagtggtgttggaatccccgtgaatgttccttagat 11011571  T
Q  301 agtgtttggcggtttgttgcggctttagtggtttttggaggtagtagttcacttttctatttttgtctcttttcttctggctcaattgataaattaggac 400  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11011572 agtgtttggcggtttgttgcggctgtagtggtttttagaggtagtagttcacttttctatttttgtctcttttcttctggctcaattgataaattaggac 11011671  T
Q  401 tcagttcttgatagtagttcactgcaatgcaagtatgcatgtctgtgatcacctacttgcaaggatgtgacggtgtacatgatcatgcatgcatg 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11011672 tcagttcttgatagtagttcactgcaatgcaagtatgcatgtctgtgatcacctacttgcaaggatgtgacggtgtacatgatcatgcatgcatg 11011766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 415 - 493
Target Start/End: Original strand, 11001176 - 11001257
Alignment:
Q  415 tagttcactgcaatgcaagtatgcatgtctg---tgatcacctacttgcaaggatgtgacggtgtacatgatcatgcatgca 493  Q
    |||||||||||||||||||||| |||| |||   |||||||||||| ||| ||||||||| |||||||||||||||||||||    
T  11001176 tagttcactgcaatgcaagtatacatgcctgctgtgatcacctactggcagggatgtgacagtgtacatgatcatgcatgca 11001257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 11509206 - 11508928
Alignment:
Q  13 gttggcttcattgttattttattgttcctaatactcttttggtgcatttggaatgtcaatcgaaagaggtgtcctccaaaaaacttagacaaggtttttg 112  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||| | | ||||||  |||||||||||||    
T  11509206 gttggcttaattgtaattttattgttcctaataatcttttggtgcatttggaatgttggtcgaaagaggtgtccactagaaaactccgacaaggtttttg 11509107  T
Q  113 gttaatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatggtatctttgaggttgatgatgcggtggagaagatt 212  Q
    |||||||||||||||| |||||||||||||||||| || ||| ||||| || || ||||||||||| |  || || ||||| || | ||||||||| |||    
T  11509106 gttaatttggcatgcgactttgtgggtgatttggaaggtgagaaatgaaattattttcaacaatgggacgttcgatgttgaggaggtggtggagaatatt 11509007  T
Q  213 aaggttctatcttagttttggagcttgc-------aagattgggccaagtttgttttacgagtggtgttggaatccccg 284  Q
    || ||| |||||| || |||||| ||||       ||||||||||| || ||| |||| || |||||||||||||||||    
T  11509006 aaagttttatcttggtcttggagtttgcatagcttaagattgggccgagcttgctttatgaatggtgttggaatccccg 11508928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 11531392 - 11531114
Alignment:
Q  13 gttggcttcattgttattttattgttcctaatactcttttggtgcatttggaatgtcaatcgaaagaggtgtcctccaaaaaacttagacaaggtttttg 112  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||| | | ||||||  |||||||||||||    
T  11531392 gttggcttaattgtaattttattgttcctaataatcttttggtgcatttggaatgttggtcgaaagaggtgtccactagaaaactccgacaaggtttttg 11531293  T
Q  113 gttaatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatggtatctttgaggttgatgatgcggtggagaagatt 212  Q
    |||||||||||||||| |||||||||||||||||| || ||| ||||| || || ||||||||||| |  || || ||||| || | ||||||||| |||    
T  11531292 gttaatttggcatgcgactttgtgggtgatttggaaggtgagaaatgaaattattttcaacaatgggacgttcgatgttgaggaggtggtggagaatatt 11531193  T
Q  213 aaggttctatcttagttttggagcttgc-------aagattgggccaagtttgttttacgagtggtgttggaatccccg 284  Q
    || ||| |||||| || |||||| ||||       ||||||||||| || ||| |||| || |||||||||||||||||    
T  11531192 aaagttttatcttggtcttggagtttgcatagcttaagattgggccgagcttgctttatgaatggtgttggaatccccg 11531114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 11501810 - 11501531
Alignment:
Q  13 gttggcttcattgttattttattgttcctaatactcttttggtgcatttggaatgtcaatcgaaagaggtgtcctccaaaaaacttagacaaggtttttg 112  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||| | | ||||||  |||||||||||||    
T  11501810 gttggcttaattgtaattttattgttcctaataatcttttggtgcatttggaatgttggtcgaaagaggtgtccactagaaaactccgacaaggtttttg 11501711  T
Q  113 gttaatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatggtatctttgaggttgatgatgcggtggagaagatt 212  Q
    |||||||||||||||| |||||||||||||||||| || ||| ||||| || || ||||||||||| |  || || ||||| || | ||||||||| |||    
T  11501710 gttaatttggcatgcgactttgtgggtgatttggaaggtgagaaatgaaattattttcaacaatgggacgttcgatgttgaggaggtggtggagaatatt 11501611  T
Q  213 aaggttctatcttagttttggagcttgc--------aagattgggccaagtttgttttacgagtggtgttggaatccccg 284  Q
    || ||| |||||| || |||||| ||||        ||||||||||| || ||| |||| || |||||||||||||||||    
T  11501610 aaagttttatcttggtcttggagtttgcataggcttaagattgggccgagcttgctttatgaatggtgttggaatccccg 11501531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 11516579 - 11516300
Alignment:
Q  13 gttggcttcattgttattttattgttcctaatactcttttggtgcatttggaatgtcaatcgaaagaggtgtcctccaaaaaacttagacaaggtttttg 112  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||| | | ||||||  |||||||||||||    
T  11516579 gttggcttaattgtaattttattgttcctaataatcttttggtgcatttggaatgttggtcgaaagaggtgtccactagaaaactccgacaaggtttttg 11516480  T
Q  113 gttaatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatggtatctttgaggttgatgatgcggtggagaagatt 212  Q
    |||||||||||||||| |||||||||||||||||| || ||| ||||| || || ||||||||||| |  || || ||||| || | ||||||||| |||    
T  11516479 gttaatttggcatgcgactttgtgggtgatttggaaggtgagaaatgaaattattttcaacaatgggacgttcgatgttgaggaggtggtggagaatatt 11516380  T
Q  213 aaggttctatcttagttttggagcttgc--------aagattgggccaagtttgttttacgagtggtgttggaatccccg 284  Q
    || ||| |||||| || |||||| ||||        ||||||||||| || ||| |||| || |||||||||||||||||    
T  11516379 aaagttttatcttggtcttggagtttgcataggcttaagattgggccgagcttgctttatgaatggtgttggaatccccg 11516300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 11523981 - 11523702
Alignment:
Q  13 gttggcttcattgttattttattgttcctaatactcttttggtgcatttggaatgtcaatcgaaagaggtgtcctccaaaaaacttagacaaggtttttg 112  Q
    |||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||   ||||||||||||||| | | ||||||  |||||||||||||    
T  11523981 gttggcttaattgtaattttattgttcctaataatcttttggtgcatttggaatgttggtcgaaagaggtgtccactagaaaactccgacaaggtttttg 11523882  T
Q  113 gttaatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatggtatctttgaggttgatgatgcggtggagaagatt 212  Q
    |||||||||||||||| |||||||||||||||||| || ||| ||||| || || ||||||||||| |  || || ||||| || | ||||||||| |||    
T  11523881 gttaatttggcatgcgactttgtgggtgatttggaaggtgagaaatgaaattattttcaacaatgggacgttcgatgttgaggaggtggtggagaatatt 11523782  T
Q  213 aaggttctatcttagttttggagcttgc--------aagattgggccaagtttgttttacgagtggtgttggaatccccg 284  Q
    || ||| |||||| || |||||| ||||        ||||||||||| || ||| |||| || |||||||||||||||||    
T  11523781 aaagttttatcttggtcttggagtttgcataggcttaagattgggccgagcttgctttatgaatggtgttggaatccccg 11523702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 11562344 - 11562065
Alignment:
Q  13 gttggcttcattgttattttattgttcctaatactcttttggtgcatttggaatgtcaatcgaaagaggtgtcctccaaaaaacttagacaaggtttttg 112  Q
    |||||||| ||||| |||||||||||| | ||| ||||||||||||||||||||||   ||||||||||||||| | | ||||||  |||||||||||||    
T  11562344 gttggcttaattgtaattttattgttcatgataatcttttggtgcatttggaatgttggtcgaaagaggtgtccactagaaaactccgacaaggtttttg 11562245  T
Q  113 gttaatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatggtatctttgaggttgatgatgcggtggagaagatt 212  Q
    |||||||||||||||| |||||||||||||||||| || ||| ||||| || || ||||||||||| |  || || ||||| || | ||||||||| |||    
T  11562244 gttaatttggcatgcgactttgtgggtgatttggaaggtgagaaatgaaattattttcaacaatgggacgttcgatgttgaggaggtggtggagaatatt 11562145  T
Q  213 aaggttctatcttagttttggagcttgc--------aagattgggccaagtttgttttacgagtggtgttggaatccccg 284  Q
    ||  || |||||| || |||||| ||||        ||||||||||| || |||||||| || |||||||||||||||||    
T  11562144 aaatttttatcttggtcttggagtttgcataggcttaagattgggccgagcttgttttatgaatggtgttggaatccccg 11562065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 284
Target Start/End: Complemental strand, 11538862 - 11538585
Alignment:
Q  13 gttggcttcattgttattttattgttcctaatactcttttggtgcatttggaatgtcaatcgaaagaggtgtcctccaaaaaacttagacaaggtttttg 112  Q
    |||||| | ||||| |||||||||||||||||| ||||||||||||||||||||||   ||||| ||||||||| | | ||||||  |||||||||||||    
T  11538862 gttggcataattgtaattttattgttcctaataatcttttggtgcatttggaatgttggtcgaatgaggtgtccactacaaaactccgacaaggtttttg 11538763  T
Q  113 gttaatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatggtatctttgaggttgatgatgcggtggagaagatt 212  Q
    |||||||||||||| | |  ||||||||||||||| || ||| ||||| || || ||||||||||| |  || || ||||| || | ||||||||| |||    
T  11538762 gttaatttggcatgtgac--tgtgggtgatttggaaggtgagaaatgaaattattttcaacaatgggacgttcgatgttgaggaggtggtggagaatatt 11538665  T
Q  213 aaggttctatcttagttttggagcttgc--------aagattgggccaagtttgttttacgagtggtgttggaatccccg 284  Q
    || ||| |||||| || |||||| ||||        ||||||||||| || |||||||| || |||||||||||||||||    
T  11538664 aaagttttatcttggtcttggagtttgcataggcttaagattgggccgagcttgttttatgaatggtgttggaatccccg 11538585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 17613692 - 17613924
Alignment:
Q  1 aaaagcttatgtgttggcttcattgttattttattgttcctaatactcttttggtgcatttggaatgtcaatcgaaagaggtgtcctccaaaaaacttag 100  Q
    ||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||    |||||||||||||||| |||||||||||    
T  17613692 aaaagcttatgtgttggcttcattgttattttattgtcccaaataatcttttggtgcatttggaatgttggccgaaagaggtgtcctctaaaaaacttag 17613791  T
Q  101 acaaggtttttggttaatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatggtatctttgaggttgatgatgcg 200  Q
    |||| |||||||||||| |||| |        |||||||||||| || || |||||| || ||||| ||||| ||||| |  |||||||||| ||| |      
T  17613792 acaatgtttttggttaacttggaa--------tgtgggtgattttgaaggtgaggaaagagataattttcaataatgggacttttgaggttggtgaggta 17613883  T
Q  201 gtggagaagattaaggttctatcttagttttggagcttgca 241  Q
    |||||||| ||||||||| | |||| |  ||||||||||||    
T  17613884 gtggagaatattaaggttatctcttggacttggagcttgca 17613924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 40492485 - 40492269
Alignment:
Q  1 aaaagcttatgtgttggcttcattgttattttattgttcctaatactcttttggtgcatttggaatgtcaatcgaaagaggtgtcctccaaaaaacttag 100  Q
    ||||| ||||||||||||| |||||| |||| ||||||||||||| |||||| |||||||| ||||||   |||| |||||||||||| |||||||||||    
T  40492485 aaaagtttatgtgttggctccattgtgatttcattgttcctaataatctttttgtgcatttagaatgttggtcgatagaggtgtcctctaaaaaacttag 40492386  T
Q  101 acaaggtttttggttaatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatggtatctttgaggttgatgatgcg 200  Q
     || || |||||| |||||||| ||| ||| |||||||||||||||| || |||||| || || || || || ||||| |  ||||| |||||||| | |    
T  40492385 gcacggattttggctaatttggtatgtgtccttgtgggtgatttggaaggtgaggaacgacattatatttaataatgggacttttgatgttgatgaggtg 40492286  T
Q  201 gtggagaagattaaggt 217  Q
    ||||| |||||||||||    
T  40492285 gtggaaaagattaaggt 40492269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 35602479 - 35602301
Alignment:
Q  1 aaaagcttatgtgttggcttcattgttattttattgttcctaatactcttttggtgcatttggaatgtcaatcgaaagaggtgtcctccaaaaaacttag 100  Q
    |||||||||||||||||||  | |||||||| |||||  || ||| |||||| |||||||||||||||   ||||  ||||||||||| || ||||||||    
T  35602479 aaaagcttatgtgttggctctaatgttatttcattgtctctgataatctttttgtgcatttggaatgttggtcgattgaggtgtcctctaagaaacttag 35602380  T
Q  101 acaaggtttttggt-taatttggcatgcgtctttgtgggtgatttggatggcgaggaatgatataatcttcaacaatgg 178  Q
      | ||||||| |  |||||||||||||||| |||||||||||||||| || ||||||||| || ||||| || |||||    
T  35602379 ggatggttttttgactaatttggcatgcgtccttgtgggtgatttggaaggtgaggaatgacatcatctttaataatgg 35602301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 57 - 241
Target Start/End: Complemental strand, 6583 - 6399
Alignment:
Q  57 catttggaatgtcaatcgaaagaggtgtcctccaaaaaacttagacaaggtttttggttaatttggcatgcgtctttgtgggtgatttggatggcgagga 156  Q
    ||||||||||||   |||||||||||||||   || |||||||| || || |||||| |  | ||| |||| ||||||||||| ||||||| |||| |||    
T  6583 catttggaatgttggtcgaaagaggtgtccaataagaaacttaggcatggattttggatggtgtggtatgcttctttgtgggttatttggaaggcgcgga 6484  T
Q  157 atgatataatcttcaacaatggtatctttgaggttgatgatgcggtggagaagattaaggttctatcttagttttggagcttgca 241  Q
    | ||| |  | || || |||||||  |||||||| ||||| | ||||||||||||||||| ||| |||| | ||||||| |||||    
T  6483 acgatgtcgtttttaataatggtaattttgaggtggatgaggtggtggagaagattaaggctctttcttggatttggagtttgca 6399  T

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