View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9581_low_4 (Length: 481)
Name: NF9581_low_4
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 14 - 474
Target Start/End: Original strand, 51358858 - 51359318
Alignment:
| Q |
14 |
atcaaatgaaatatcatttctatatttgtaccattttgcacaaaagatatatataacaaagtttagcatactaagtattgccaagaaccaataaaatagc |
113 |
Q |
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| T |
51358858 |
atcaaatgaaatatcatttctatatttgtaccattttgcacaaaagatatatataacaaagtttagcatactaagtattgccaagaaccaataaaatagc |
51358957 |
T |
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| Q |
114 |
tcaacatggttttggttcaagtctgttccctctaaccatcctttattactctttgtaatcctacttgtcactgtgtttatgagctcaacaaaaactgtgc |
213 |
Q |
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| T |
51358958 |
tcaacatggttttggttcaagtctgttccctctaaccatcctttattactctttgtaatcctacttgtcactgtgtttatgagctcaacaaaaactgtgc |
51359057 |
T |
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| Q |
214 |
tcaaatagtaaccaattgacaatgaaagaaatgagaaagaagtggatagtgaacgcattccttgaggagcttctttgtagaaaaactctaatagtccaac |
313 |
Q |
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| T |
51359058 |
tcaaatagtaaccaattgacaatgaaagaaatgagaaagaagtggatagtgaacgcattccttgaggagcttctttgtagaaaaactctaatagtccaac |
51359157 |
T |
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| Q |
314 |
caatgtgaacatatcagcaatgccaaagattgcataatggaaagaaagccaaaagaggctgattttttggttattgtgatcattgaaatagtgctttctt |
413 |
Q |
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| T |
51359158 |
caatgtgaacatatcagcaatgccaaagattgcataatggaaagaaagccaaaagaggctgatttttttgttattgtgatcattgaaatagtgctttctt |
51359257 |
T |
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| Q |
414 |
ttcacttctactaaacctgctatgatcattgagattgctgataaaactaggccaacaccaa |
474 |
Q |
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| T |
51359258 |
ttcacttctactaaacctgctatgatcattgagattgctgataaaactaggccaacaccaa |
51359318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 373
Target Start/End: Original strand, 37982067 - 37982158
Alignment:
| Q |
282 |
gcttctttgtagaaaaactctaatagtccaaccaatgtgaacatatcagcaatgccaaagattgcataatggaaagaaagccaaaagaggct |
373 |
Q |
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|||||| ||||||| || |||||||||||||| | ||||||||| || ||||| ||||| || ||||| || ||||| | |||||| ||||| |
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| T |
37982067 |
gcttctctgtagaagaattctaatagtccaacaagtgtgaacatgtctgcaataccaaatatagcatattgaaaagataaccaaaataggct |
37982158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 45661368 - 45661312
Alignment:
| Q |
317 |
tgtgaacatatcagcaatgccaaagattgcataatggaaagaaagccaaaagaggct |
373 |
Q |
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| T |
45661368 |
tgtgaacatatcagcaataccaaaaataccatattggaatgaaagccaaaataggct |
45661312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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