View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9581_low_8 (Length: 431)
Name: NF9581_low_8
Description: NF9581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9581_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 11 - 416
Target Start/End: Complemental strand, 2611629 - 2611225
Alignment:
| Q |
11 |
caaaggcgtaacagtgatcatggagtcacaacaatccaaccaaaaattaaagtattaaaccaatctctatcataagcaatctcaacagaaagcataacaa |
110 |
Q |
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| T |
2611629 |
caaaggcgtaacagtgatcatggagtcacaacaatccaaccaaaaattaaagtattaaaccaatctctatcataagcaatctcaacagaaagcataacaa |
2611530 |
T |
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| Q |
111 |
cagtaagttcaacattgagagcagaagttctaaattcaaggcaaaaccaccaataaaattacctttatagtcacnnnnnnntgccaccataggaaaccaa |
210 |
Q |
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| T |
2611529 |
cagtaagttcaacattgagagcagaagttctaaattcaaggcaaaaccaccaataaaattacctttatagtcacaaaaaa-tgccaccataggaaaccaa |
2611431 |
T |
|
| Q |
211 |
atcaatatgacccttggttccctcatctatattgcactccaacgaacctcaataataataggggttgaaagaggattacaactaactttaaaatgcttct |
310 |
Q |
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| T |
2611430 |
atcaatatgacccttggttgcctcatctatattgcactccaacgaacctcaataataataggggttgaaagaggattacaactaactttaaaatgcttct |
2611331 |
T |
|
| Q |
311 |
agattttaatggaaaatcccacataatttgggaagtaagaaattgtattaaaagagagttttgaataatttatatgaatttttcaaattcaatttacgat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2611330 |
agattttaatggaaaatcccacataatttgggaagtaaaaaattgaattaaaagagagttttgaataatttatataaatttttcaaattcaatttacgat |
2611231 |
T |
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| Q |
411 |
attctt |
416 |
Q |
| |
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|||||| |
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| T |
2611230 |
attctt |
2611225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 399
Target Start/End: Original strand, 35989132 - 35989191
Alignment:
| Q |
340 |
gggaagtaagaaattgtattaaaagagagttttgaataatttatatgaatttttcaaatt |
399 |
Q |
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| T |
35989132 |
gggaactaaaaaattgtattagaggagagttttgaaggatttatatgaattcttcaaatt |
35989191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 408
Target Start/End: Original strand, 53601294 - 53601335
Alignment:
| Q |
367 |
agttttgaataatttatatgaatttttcaaattcaatttacg |
408 |
Q |
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| T |
53601294 |
agttttgaagaatttatatgaattcttcaaattcaatctacg |
53601335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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